Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq862 201 2e-46 seq34 89.7 7e-13 >seq862 Length=148971 Score = 201 bits (222), Expect = 2e-46 Identities = 617/948 (65%), Gaps = 57/948 (6%) Strand=Plus/Minus Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| ||||||||||| || ||||| || || ||||| || ||||| | |||||| ||||| Sbjct 30586 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCGATTGATATGTTTTC 30527 Query 39388 CATGAAATCAAACGGATTA-------GTTGCAT----------------TATAt------ 39418 |||||| ||||| ||||| | | ||| || || Sbjct 30526 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 30467 Query 39419 ttt-------tttttAAATCCTAATTCTGAAATCAAT---CTATCTGCAACAAATTCTAT 39468 ||| |||| | | || | ||| || || | || || || | |||||| || Sbjct 30466 TTTGCAAACCTTTTCATAACCAAGTTC---AACCAGTAGCCTGTCAGCGATAAATTCAAT 30410 Query 39469 GTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAG 39528 ||| ||||| || |||||||| || || | | |||||||| || || | || Sbjct 30409 GTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAA 30350 Query 39529 AAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGG 39588 |||||| | ||| || || |||||| ||||||| || || || | || | || Sbjct 30349 AAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACTCAAC-ACGT--TCTTTGGG 30293 Query 39589 TGGATGCA--ATAA-ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATC 39645 || | |||| ||||||||||| || || ||||| ||||||||||| || || || Sbjct 30292 AGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTC 30233 Query 39646 TCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCA 39705 |||||| |||||||| || ||| | ||||||||||| ||||| || || || ||||| Sbjct 30232 TCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCA 30173 Query 39706 AAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||| || ||||| |||||||| |||| ||||| ||||||||||| ||||| | Sbjct 30172 GAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAA 30113 Query 39766 TCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTT 39822 | ||| | || | | || || | ||||| | |||||| | ||| || || Sbjct 30112 GCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTT 30053 Query 39823 CTTTACACAAGGCATTGTTTC-TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTT 39881 ||||||| | ||| | ||| || || |||||| | | |||| | | |||| Sbjct 30052 AGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTT 29994 Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941 | | |||||||| || || | | |||||||| || || || || || || || |||| Sbjct 29993 TGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCT 29934 Query 39942 GAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCA 40001 | | || || ||||| | | || | ||| || || ||| | || | |||| | Sbjct 29933 GCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCAGGA 29874 Query 40002 AATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061 || || || ||||| ||||| || ||||| || || || || | || |||| Sbjct 29873 GGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGATATGAAAT 29814 Query 40062 ATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTT 40121 ||| | | | || | ||| | ||| |||||| |||| ||| || |||| Sbjct 29813 GACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATCTTTGGATAAATCGACCTCTT 29754 Query 40122 CAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTA 40181 | | |||||||| || || | ||||| || || | | ||| | ||| | |||| || Sbjct 29753 CCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTA 29694 Query 40182 TTGGAAAAATAACAAATCTATTTGGATTT--TTTGCAAGGATGGGTTC 40227 | || |||| || || | | ||| ||| |||| || | |||||| Sbjct 29693 TGGGGAAAAGGACGAAACGGTGTGGGTTTGGTTTG--AGTAAGGGTTC 29648 >seq34 Length=32115376 Score = 89.7 bits (98), Expect = 7e-13 Identities = 164/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||||||||| |||| ||||||||||||| || || | || |||||| ||| Sbjct 8065758 AATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGAATGTTATG 8065817 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || | ||| || || || || || | ||||| || | ||||| ||| | || || Sbjct 8065818 AACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGTATC 8065877 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 || || || ||||| ||||| ||| |||| | | |||||||| || || | || || Sbjct 8065878 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTG-TG 8065936 Query 69984 ATGTA-TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | || ||| || || ||||| | ||| || || || || || ||||| |||||||| Sbjct 8065937 GTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 8065994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || |||||||| || || ||||| || || |||||| ||||||| || ||||| Sbjct 8064352 TACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATAC 8064411 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 |||||| |||||||||||||| || |||||||||||||| || || | ||| | | Sbjct 8064412 CTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGC 8064471 Query 69136 TTATTTGAACT 69146 | ||||| || Sbjct 8064472 ATGTTTGATCT 8064482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686901201071400