Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq862 174 1e-38 seq1 89.7 4e-13 >seq862 Length=148971 Score = 174 bits (192), Expect = 1e-38 Identities = 393/587 (67%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | || || || |||| || || | ||||| | || || || || || Sbjct 29678 TTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCC 29737 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| | ||||| || ||||| | ||||| || ||||||| | ||| Sbjct 29738 TCTTTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCATACATTGGGAGTCTTTA 29797 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||| ||| ||||| ||||| | || || || || ||||| ||||| ||||| Sbjct 29798 AAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCGAGTGACGGA 29857 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || ||| || || | | || || |||||||| || | ||||| | || Sbjct 29858 ATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGAAGTCCAGATTCCAGAGGTTCGT 29917 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 ||||| |||||| | || || || || || |||||||| || ||||||||| | | || Sbjct 29918 TGTTTCTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTG 29977 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA-GAAAC 44058 || ||||| ||||||||||| | || | | | | || || || ||| | ||| Sbjct 29978 ATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAAC 30037 Query 44059 AGTACCTGCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAA---ATTCAAAT 44113 || || | | |||| || || | ||||| | | ||||| |||| || Sbjct 30038 TTAACTTGTGTTGCTAAA---AAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAA 30094 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | |||||| |||||| | || || ||||||| |||||||| | || ||||| || Sbjct 30095 TCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGT 30154 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 ||||| || ||||| ||| | |||||||||||| | |||||||| || | ||| Sbjct 30155 AGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGC 30214 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||||| ||||| ||| | || ||||| ||||||| ||||| ||||| Sbjct 30215 AATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTG 30261 >seq1 Length=65476681 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||| || || || ||||| || || || ||||||||| | || || | ||||||||| || Sbjct 18598720 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTACTAACATGTATGATTGCTCA 18598661 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTA 41254 ||||| ||||||||||||||| || || ||||| | || |||| |||||||| Sbjct 18598660 TGTTACTGGTTTAAAACCTGGTGAGTTCGTCCACACAATTGGCGATGCGCATATTTA 18598604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451713064425