Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq789 116 2e-21 >seq1 Length=65476681 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||| || |||||| ||| || || || || ||||| || Sbjct 54270784 CCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 54270725 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| || || ||||| ||||| || | ||| ||||| || || || Sbjct 54270724 AATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGA 54270665 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | || || || ||| |||| || | || || | ||| ||||| ||| ||| | Sbjct 54270664 ATCCCTTCTTTATCTTGGATC-TTGGCCTTCACATTCTCAATGGTGTCACTCG-GCTCAA 54270607 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || ||||||||||| ||||| |||||||| || || ||||| Sbjct 54270606 CTTCCAAAGTGATCGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Score = 113 bits (124), Expect = 3e-20 Identities = 167/230 (73%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTT-TTGAATGTTATAATCTGA 34538 || || | ||||||||||||||| || |||||| ||| || ||| || | |||| || Sbjct 54271013 CCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAGA 54270954 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | ||||| || || ||||| ||||| || | ||| ||||| || || || Sbjct 54270953 CAATGTGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGG 54270894 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCC 34656 | || || || ||| |||||| | || || | ||| ||||| ||| ||| Sbjct 54270893 AATCCCTTCTTTATCTTGGATCTTG-GCCTTCACATTCTCAATGGTGTCACTCGG-CTCA 54270836 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || ||||||||||| || || || ||||||||||||||||| Sbjct 54270835 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 >seq789 Length=29961 Score = 116 bits (128), Expect = 2e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | |||||| || ||||| || || || || || ||| Sbjct 595 CCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAA 654 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| |||||||| || ||||| |||||||| |||||||| || || Sbjct 655 AGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGG 714 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| | ||||| | | ||||| || | ||| || Sbjct 715 ATGCCTTCTTTATCTTGGAT-TTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAAC 773 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 ||| | ||||| ||||| || || | || ||||| ||||||||||| |||| Sbjct 774 TTCTAGAGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCATCTTGA 826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726205346205