Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14 129 5e-25 seq789 116 3e-21 >seq14 Length=34464480 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| || ||| | || || | || ||||| || Sbjct 20621626 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20621567 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20621566 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20621507 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20621506 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20621447 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATA 27218 || || |||||||| ||||||||| | ||||| || |||| || |||||| Sbjct 20621446 ATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGGCATA 20621396 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| || ||| | || || | || ||||| || Sbjct 20637634 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20637575 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20637574 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20637515 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20637514 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20637455 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATA 27218 || || |||||||| ||||||||| | ||||| || |||| || |||||| Sbjct 20637454 ATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGGCATA 20637404 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| ||||| || |||| || ||| |||| || | || ||||| || Sbjct 20622082 ATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGT 20622023 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20622022 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20621963 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20621962 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20621903 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 20621902 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20621853 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| ||||| || |||| || ||| |||| || | || ||||| || Sbjct 20638774 ATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGT 20638715 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20638714 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638655 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20638654 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20638595 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 20638594 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20638545 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| || ||| | || || | || ||||| || Sbjct 20621854 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20621795 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20621794 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20621735 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20621734 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20621675 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 20621674 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20621625 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| || ||| | || || | || ||||| || Sbjct 20637862 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20637803 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20637802 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20637743 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20637742 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20637683 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 20637682 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20637633 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| || ||| | || || | || ||||| || Sbjct 20638090 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638031 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20638030 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20637971 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20637970 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20637911 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 20637910 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20637861 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| || ||| | || || | || ||||| || Sbjct 20638318 ATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638259 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20638258 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638199 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20638198 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20638139 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 20638138 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20638089 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || || |||| || ||| | || || | || ||||| || Sbjct 20638546 ATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638487 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 20638486 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638427 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || |||||||| | || | || || |||||| Sbjct 20638426 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 20638367 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 20638366 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20638317 >seq789 Length=29961 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || |||| ||||| ||||| || || | Sbjct 821 ATGCAGATTTTCGTGAAGACACTTACTGGAAAAACTATAACTCTAGAAGTTGAGCCTGCT 762 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || || ||||| ||||| ||||||||||| ||||| || ||| Sbjct 761 GATACAATAGAAGCAGTTAAGGCGAAAATCCAAGATAAAGAAGGCATCCCACCAGACCAA 702 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || ||||||||| ||||||| | || ||||||| ||||| Sbjct 701 CAACGTTTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTACAAT 642 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 || || ||||| || || | ||| | || | ||| | || ||||| |||| Sbjct 641 ATACAGAAGGAATCAACACTCCATCTTGTCCTTCGTCTTCGTGGTGGTATAA 590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913588715200