Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq14 163 7e-35 seq1 138 3e-27 seq789 113 1e-19 >seq14 Length=34464480 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| |||||||| || || | || || | ||||||| Sbjct 20621643 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20621702 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | ||||||||||||||||||| ||||| ||||| Sbjct 20621703 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20621762 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || || ||| || ||||| | ||||||||| Sbjct 20621763 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20621822 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | |||||| Sbjct 20621823 TTACCAGTCAACGTCTTCACAAATATTTGCATT 20621855 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| |||||||| || || | || || | ||||||| Sbjct 20637651 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20637710 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | ||||||||||||||||||| ||||| ||||| Sbjct 20637711 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20637770 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || || ||| || ||||| | ||||||||| Sbjct 20637771 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20637830 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | |||||| Sbjct 20637831 TTACCAGTCAACGTCTTCACAAATATTTGCATT 20637863 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| |||||||| || || | || || | ||||||| Sbjct 20637879 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20637938 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | ||||||||||||||||||| ||||| ||||| Sbjct 20637939 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20637998 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || || ||| || ||||| | ||||||||| Sbjct 20637999 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20638058 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | |||||| Sbjct 20638059 TTACCAGTCAACGTCTTCACAAATATTTGCATT 20638091 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| |||||||| || || | || || | ||||||| Sbjct 20638107 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20638166 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | ||||||||||||||||||| ||||| ||||| Sbjct 20638167 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20638226 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || || ||| || ||||| | ||||||||| Sbjct 20638227 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20638286 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | |||||| Sbjct 20638287 TTACCAGTCAATGTCTTCACAAATATTTGCATT 20638319 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| |||||||| || || | || || | ||||||| Sbjct 20638335 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20638394 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | ||||||||||||||||||| ||||| ||||| Sbjct 20638395 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20638454 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || || ||| || ||||| | ||||||||| Sbjct 20638455 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTC 20638514 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | |||||| Sbjct 20638515 TTACCAGTCAATGTCTTCACAAATATTTGCATT 20638547 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| |||||||| || || | || || | ||||||| Sbjct 20621871 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20621930 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | ||||||||||||||||||| ||||| ||||| Sbjct 20621931 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20621990 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || || ||| || ||||| | || || ||| Sbjct 20621991 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTC 20622050 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | |||||||| || | ||||||| Sbjct 20622051 TTCCCTGTCAATGTCTTTACGAATATCTGCATT 20622083 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| |||||||| |||||||| || || | || || | ||||||| Sbjct 20638563 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20638622 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| | ||||||||||||||||||| ||||| ||||| Sbjct 20638623 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20638682 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || || ||| || ||||| | || || ||| Sbjct 20638683 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTC 20638742 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | |||||||| || | ||||||| Sbjct 20638743 TTCCCTGTCAATGTCTTTACGAATATCTGCATT 20638775 Score = 147 bits (162), Expect = 5e-30 Identities = 168/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||||| || | || ||||| || |||||||| || || | || Sbjct 20621402 TCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAG 20621461 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||||||||| |||||| || |||||||| | ||||||||||||||||||| Sbjct 20621462 AGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAAT 20621521 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| ||||| |||||||| |||||| || || || || ||| || ||||| Sbjct 20621522 ACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTC 20621581 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||||||||| || || | ||||| ||||| | |||||| Sbjct 20621582 CAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621627 Score = 147 bits (162), Expect = 5e-30 Identities = 168/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || ||||| || | || ||||| || |||||||| || || | || Sbjct 20637410 TCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAG 20637469 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||||||||| |||||| || |||||||| | ||||||||||||||||||| Sbjct 20637470 AGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAAT 20637529 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| ||||| |||||||| |||||| || || || || ||| || ||||| Sbjct 20637530 ACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTC 20637589 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||||||||| || || | ||||| ||||| | |||||| Sbjct 20637590 CAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637635 >seq1 Length=65476681 Score = 138 bits (152), Expect = 3e-27 Identities = 165/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTT-TTGGATGTTATAATCCGCAAGGG 210951 |||||| | | || | |||||||||||||||||| |||||| | |||| | | | Sbjct 54271008 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTTGGATATGTAAATCAGACAATG 54270949 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||| |||||||| || || ||||| || |||||||| ||||| |||| | Sbjct 54270948 TGCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCC 54270889 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| || || |||||||| ||||| || || ||||||||| ||||| || | Sbjct 54270888 CTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCA 54270829 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || || || | ||||| ||||| | |||||| Sbjct 54270828 AAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 54270786 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | |||||||||||||||||| ||||| || ||||| | | || Sbjct 54270779 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 54270720 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| || || ||||| || |||||||| ||||| |||| || Sbjct 54270719 GCGACCATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCC 54270660 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || |||||||| ||||| || || ||||||||| ||||| || | Sbjct 54270659 TTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAA 54270600 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGT 211122 ||||||||| || || || | || || || || | ||||| || ||| Sbjct 54270599 AGTGATCGTTTTACCAGTTAATGTTTTCACGAATATTTGCATCGTAAGGT 54270550 >seq789 Length=29961 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||| || || || || || || || || || || || | ||| || Sbjct 600 ACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGT 659 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| || ||||| || || || | ||||||||||| || || | || Sbjct 660 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCC 719 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || ||||| || || || ||| || || |||| ||||| || || Sbjct 720 TTCTTTATCTTGGATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 779 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || ||||| || || ||||| || || | |||||| || Sbjct 780 AGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCATCTT 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159138856303025