Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq789 131 1e-25 seq1 104 2e-17 seq14 100 2e-16 >seq789 Length=29961 Score = 131 bits (144), Expect = 1e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || || || || |||||||| || ||||| |||||||| | Sbjct 824 AAGATGCAGATTTTCGTGAAGACACTTACTGGAAAAACTATAACTCTAGAAGTTGAGCCT 765 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | ||| | | || ||||| || |||||||| | || ||||| Sbjct 764 GCTGATACAATAGAAGCAGTTAAGGCGAAAATCCAAGATAAAGAAGGCATCCCACCAGAC 705 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| |||||||| ||||| ||||||||||||||||| | ||| ||| | ||| ||| Sbjct 704 CAACAACGTTTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTAC 645 Query 23788 AACATACAAAAAGAGTCCACATTACAT 23814 || ||||| || || || ||| | ||| Sbjct 644 AATATACAGAAGGAATCAACACTCCAT 618 >seq1 Length=65476681 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 |||| ||||| || ||||| ||||| | || || |||||||||||| | |||||||| Sbjct 54270552 CTTACGATGCAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTGAG 54270611 Query 23665 TCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 | | ||||| |||| ||| | || | || | | || |||||||| | || || Sbjct 54270612 CCGAGTGACACCATTGAGAATGTGAAGGCCAAGA-TCCAAGATAAAGAAGGGATTCCACC 54270670 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGA 23783 |||||||| ||| | || ||||| || || || || ||||| | ||||| || || Sbjct 54270671 TGATCAACAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGA 54270730 Query 23784 TTACAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||||||||| Sbjct 54270731 TTACAATATCCAGAAAGAGTCCAC 54270754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | || || |||||||||||| | |||||||| | | Sbjct 54270786 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270845 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || || |||||||| | || || ||||| Sbjct 54270846 GACACCATTGAGAATGTGAAGGC-CAAGATCCAAGATAAAGAAGGGATTCCACCTGATCA 54270904 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| || || || || ||||| | ||||| || |||| | Sbjct 54270905 ACAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTTACA 54270964 Query 23790 CATACAA-AAAGAGTCCAC 23807 || ||| ||||||||||| Sbjct 54270965 TATCCAAGAAAGAGTCCAC 54270983 >seq14 Length=34464480 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || || || | | Sbjct 20621627 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20621568 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20621567 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20621509 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20621508 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20621449 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || || ||||| || |||||| | |||||| | |||| ||||| Sbjct 20621448 ACATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGG 20621400 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || || || | | Sbjct 20637635 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20637576 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20637575 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20637517 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20637516 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20637457 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || || ||||| || |||||| | |||||| | |||| ||||| Sbjct 20637456 ACATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGG 20637408 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || || || | | Sbjct 20621855 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20621796 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20621795 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20621737 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20621736 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20621677 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 20621676 ACATCCAGAAAGAGTCGAC 20621658 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || | || || || || || || | || || || | | Sbjct 20622083 AATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAG 20622024 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20622023 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20621965 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20621964 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20621905 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 20621904 ACATCCAGAAAGAGTCGAC 20621886 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || || || | | Sbjct 20637863 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20637804 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20637803 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20637745 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20637744 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20637685 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 20637684 ACATCCAGAAAGAGTCGAC 20637666 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || || || | | Sbjct 20638091 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638032 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20638031 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20637973 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20637972 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20637913 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 20637912 ACATCCAGAAAGAGTCGAC 20637894 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || || || | | Sbjct 20638319 AATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638260 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20638259 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20638201 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20638200 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20638141 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 20638140 ACATCCAGAAAGAGTCGAC 20638122 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || || || | | Sbjct 20638547 AATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638488 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20638487 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20638429 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20638428 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20638369 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 20638368 ACATCCAGAAAGAGTCGAC 20638350 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || | || || || || || || | || || || | | Sbjct 20638775 AATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAG 20638716 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 20638715 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 20638657 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || || || || || || ||||||| | ||| ||| | || |||| Sbjct 20638656 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 20638597 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 20638596 ACATCCAGAAAGAGTCGAC 20638578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005954249580