Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq862 212 5e-50 >seq862 Length=148971 Score = 212 bits (234), Expect = 5e-50 Identities = 479/715 (67%), Gaps = 14/715 (2%) Strand=Plus/Minus Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCAC 4441 |||||| | |||||| || ||||| | ||| | || ||| || || |||||||| || || Sbjct 30427 GTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTGAC 30368 Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTT 4501 ||||| || | | |||||||| |||||||| || || ||| | ||||| | Sbjct 30367 TGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACTC 30308 Query 4502 TATTTTATCTTTAGATGGTTTATT--TACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 | ||||| | || || || || || || | |||||||| ||| || |||||| Sbjct 30307 AACACGTTCTTTGGGAGGCTTTTTGATAATATGTTT--AAACAATAGACAAGCGAAATCA 30250 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 ||||| | ||||||||||| || || | ||| || ||| | | ||| ||||| | | Sbjct 30249 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 30190 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 |||| || |||||||| |||||||| ||||| |||||||| || | ||||| || Sbjct 30189 CCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACT 30130 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--TCTTTAATCCATTTTA 4737 || ||||| || ||||| | | | | | || | || | || |||||| | || Sbjct 30129 GCTGCAAAAGCAACTAA--GCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTA 30072 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATT 4794 ||||||| | ||| ||||| ||| || | | || ||| ||||| || || | Sbjct 30071 ATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGT 30012 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 |||| || | | ||||| || || || || || | || ||||||||||| | Sbjct 30011 CCCTTTCTTTA---GAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGT 29955 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 | ||||| || ||||| ||||| | || || || || | | | |||| | || |||| Sbjct 29954 GAATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTT 29895 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | | || | ||| | | ||| ||| || || |||||||| || ||||| || | Sbjct 29894 CTTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGG 29835 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 | || || | ||||| || | |||| || || | | ||| || |||| Sbjct 29834 CTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAAT 29775 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 |||| | |||||| || ||||| ||||||||||| || ||| | || || || || Sbjct 29774 CTTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATA 29720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044993869705