Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq862 178 2e-39 seq34 104 3e-17 >seq862 Length=148971 Score = 178 bits (196), Expect = 2e-39 Identities = 607/940 (65%), Gaps = 71/940 (8%) Strand=Plus/Minus Query 47830 CTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTT 47889 || |||||||||| || |||||||||||| || || ||||| || || ||||| | Sbjct 30608 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 30549 Query 47890 TGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATA-------- 47941 | ||||| | |||||| |||||||| || ||||| ||||| | | || ||| Sbjct 30548 TTCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 30489 Query 47942 --------AAtt--------------------tttttAAATCCTAATTCTGAAATCAGT- 47972 |||| |||| | | || | ||| || |||| Sbjct 30488 AGGAAAACAATTAAATAGAAGATTTGCAAACCTTTTCATAACCAAGTTC---AACCAGTA 30432 Query 47973 --CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 || || || | ||||| || || ||||| || |||||||| || || | Sbjct 30431 GCCTGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGC 30372 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090 | |||||||| || || | | |||||| ||||| || || || || |||||| | Sbjct 30371 TGACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTG 30312 Query 48091 ATGTTACCGTTTCCTCACTTGGTGGATACA--ACAA-ATGTTTAAACATTAAACATGCAA 48147 | || ||| | | || || | | || ||||||||||| || ||| || | Sbjct 30311 ACTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGA 30255 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 |||||||||| || ||||| |||||||| |||||||| || ||| | || || |||| Sbjct 30254 AATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCA 30195 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCT 48266 | || || ||||| || ||||| ||||| || || |||| | |||||||| || | ||| Sbjct 30194 TAAGACCTCGTTTCTTAAGCCAGAATATAGCTGC-AAAGCTACCAGAAAAAAAGACACCT 30136 Query 48267 TCTACGGCCGCAAATGC-GGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-----ATC 48320 || || || ||||| || |||| | ||| | || | | || | | | ||| Sbjct 30135 TCCACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATT--TAGAATCACCAATC 30079 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC-TATAGCATTAAA 48379 || | |||||| | |||||| || ||||||| | ||| | ||| || || || Sbjct 30078 CAATCTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAA 30020 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||||||| |||| || ||||| | ||| ||||| || || | | |||||||| Sbjct 30019 GAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTC 29960 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 ||||||||||| || || || ||||| | || || ||||| | | |||| ||||| Sbjct 29959 AGAGTGAATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTG 29900 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 || || | || ||||| | ||||| || ||||| ||||| || ||||| Sbjct 29899 GACTTCTTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAA 29840 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA-----TTCCAG 48614 || ||||| || | || |||| ||| || | |||| | ||| Sbjct 29839 GAAGGCTAACACGTAGGATATGAAATGACGTTC--CCCAACT---TTTAAAGACTCCCAA 29785 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | ||| |||||| |||| ||| || ||||| | |||||||| || || | || || Sbjct 29784 TGTATGAAATCTTTGGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTC 29725 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAA 48714 ||||| | || ||| | ||| ||||| || ||||||| Sbjct 29724 TTATAAAAATGCCAGACATCGTGGTATTCTATGGGGAAAA 29685 >seq34 Length=32115376 Score = 104 bits (114), Expect = 3e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 |||||| || ||| |||||||||||||| || || | ||| |||||| ||| Sbjct 8065758 AATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGAATGTTATG 8065817 Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331 || || || || || || || |||||||||| | || || ||| | ||||| Sbjct 8065818 AACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGTATC 8065877 Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 78391 ||| || || |||||||| || || |||| | | |||||||| || || | || | Sbjct 8065878 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGG 8065937 Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | | ||| || || ||||| | |||||| || ||||| |||||||| |||||||| Sbjct 8065938 TTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 8065994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661115226400