Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq862 178 2e-39 seq34 89.7 7e-13 >seq862 Length=148971 Score = 178 bits (196), Expect = 2e-39 Identities = 501/760 (66%), Gaps = 17/760 (2%) Strand=Plus/Minus Query 46491 CATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTG 46550 ||||| || |||||||| || || | |||| ||||| || || | | |||||| || Sbjct 30400 CATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAACTCCTG 30341 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGC-- 46608 ||| || || || || |||||| || || ||| | | || || | Sbjct 30340 TTCTATCAGAACCGCCTCTCTTATTATTGACTCAACACGTTCTT---TGGGAGGCTTTTT 30284 Query 46609 -ATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 || | ||||||||||| || ||| || ||||||||||| || ||||| |||||||| || Sbjct 30283 GATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGAT 30224 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 |||||| || ||| | || |||||||| || || || || || ||||| |||||||| Sbjct 30223 TAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGC 30164 Query 46728 CGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 || |||| | |||||||| || | ||||| || || || || || || | | ||| Sbjct 30163 TGC-AAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTG 30105 Query 46787 CGTAACTGG---CATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACAC 46843 | || | | | || | |||||| | ||||| | ||||||||| |||| Sbjct 30104 CAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAGCAACAC 30045 Query 46844 AAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATAT 46902 ||| | ||| | ||| || || |||||||||| |||| | | ||||| | ||| Sbjct 30044 AAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTAT 29986 Query 46903 GTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCG 46962 ||||| || || | | |||||||| || ||||| || || ||||| ||||| | || Sbjct 29985 GTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCCCA 29926 Query 46963 TAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCA 47022 || ||||| | | || | |||||| || ||| | || ||||| | ||||| Sbjct 29925 TAGAAACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCAGGAGGTTCTCG 29866 Query 47023 TTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 47082 || ||||| ||||| || ||||| || || || || | || |||| ||| Sbjct 29865 AGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGATATGAAATGACGTTCC 29806 Query 47083 TCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 47142 | | | | ||| | ||| |||||| |||| ||| || ||||| | ||| Sbjct 29805 CCAACTTTTAAAGACTCCCAATGTATGAAATCTTTGGATAAATCGACCTCTTCCACAGTC 29746 Query 47143 CAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAA 47202 || || || || | || || ||||| | || ||| | ||| | |||| || || ||| Sbjct 29745 CAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGAAA 29686 Query 47203 ATAACAAATCTATTTGGATTT--TTTGCAAGTATAGGTTC 47240 | || || | | ||| ||| |||| |||| ||||| Sbjct 29685 AGGACGAAACGGTGTGGGTTTGGTTTG--AGTAAGGGTTC 29648 >seq34 Length=32115376 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 75908 ACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCG 75967 ||| |||| | ||| ||| || || || || || || || || | ||||| ||| Sbjct 8064241 ACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCA 8064300 Query 75968 TAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTT 76027 || ||||| | | | ||||| | ||| ||| || | | | | || |||||| Sbjct 8064301 TATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTT 8064360 Query 76028 TCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGA 76087 || || || |||||||| || |||||| |||||||||| ||||| |||||| Sbjct 8064361 TCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGA 8064420 Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 |||||||||||| || || ||||| ||||||||||| || | ||| Sbjct 8064421 CAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATG 8064467 Score = 87.8 bits (96), Expect = 3e-12 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 77302 AGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAA--TAGtttttttGTTTCC 77359 |||||||| ||| | |||| ||||| | || || ||| ||| ||| |||||| Sbjct 8067230 AGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAAAACCTAGATTTC--GTTTCC 8067287 Query 77360 TTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTA 77419 ||||||||||| || ||||| | | |||||| | ||| ||||| ||| |||||| |||| Sbjct 8067288 TTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATGGCATATTCATGATGTTTTGTA 8067347 Query 77420 GTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCC 77475 | | | || | | || || || | | |||| ||||||| |||||| ||||| Sbjct 8067348 ATCATGCTTGCACATGTCTCGGCTGCCAGATTATCCAATTCTACAGTAGTCACTCC 8067403 Score = 86.0 bits (94), Expect = 9e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 76807 AATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 ||| || || ||| ||||||||||||| || || | ||| ||||| ||| Sbjct 8065758 AATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGAATGTTATG 8065817 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 || | ||| || || || || || | ||||| || | ||||| ||| | || || Sbjct 8065818 AACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGTATC 8065877 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 76986 || ||||| ||||||||||| || |||| | | |||||||| || || | || | Sbjct 8065878 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGG 8065937 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA 77043 | | ||| || || ||||| | ||| || || ||||| || ||||| |||||||| Sbjct 8065938 TTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 8065994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926513163200