Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq789 109 1e-18 seq14 91.5 3e-13 seq1 89.7 1e-12 >seq789 Length=29961 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || || || || || ||||| |||| | ||||| |||||| Sbjct 610 AGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCT 669 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | | || ||||| | | ||| ||||| || ||| Sbjct 670 TCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCT 729 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || | |||| | || | | ||| ||||| ||||| |||||| Sbjct 730 TGGATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGAGTTATAGTT 789 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||||||||| | |||||| || Sbjct 790 TTTCCAGTAAGTGTCTTCACGAAAATCTGCATCTT 824 >seq14 Length=34464480 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| |||||||| ||||||||||| || | | ||| | |||||| Sbjct 20621871 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20621930 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || |||||||| | | || ||||| | | || ||||| || ||| Sbjct 20621931 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20621990 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| |||| | | || | ||| || || | || ||||| Sbjct 20621991 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTC 20622050 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||| ||||| | ||||||| Sbjct 20622051 TTCCCTGTCAATGTCTTTACGAATATCTGCATT 20622083 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| |||||||| ||||||||||| || | | ||| | |||||| Sbjct 20638563 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 20638622 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || |||||||| | | || ||||| | | || ||||| || ||| Sbjct 20638623 TCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 20638682 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| |||| | | || | ||| || || | || ||||| Sbjct 20638683 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTTATAGTC 20638742 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||| ||||| | ||||||| Sbjct 20638743 TTCCCTGTCAATGTCTTTACGAATATCTGCATT 20638775 >seq1 Length=65476681 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| |||||||| ||||| |||||||| | || || | |||||||||| Sbjct 54270764 CAAG-TGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTGCGACCATCTTCTA 54270706 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| || | || || || | | || ||||| || ||||| | Sbjct 54270705 GCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTTATCTTGGA 54270646 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || ||| |||| | | |||| ||| ||| ||||| | ||| || |||| Sbjct 54270645 TCTTGGCCTTCACATTCTCAATGGTGTC---ACTCGGCTCAACTTCCAAAGTGATCGTTT 54270589 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || | || |||||||| | ||||| Sbjct 54270588 TACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153807716753835