Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq862 233 2e-56 >seq862 Length=148971 Score = 233 bits (258), Expect = 2e-56 Identities = 475/700 (68%), Gaps = 14/700 (2%) Strand=Plus/Minus Query 23338 AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGT 23397 ||||| || || | ||||||||| || ||||||||||| | | || || || |||| Sbjct 30432 AGCCTGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAG 30373 Query 23398 TTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATT 23457 | ||||| | || || |||| || | ||| || ||| || ||| | |||||| Sbjct 30372 CTGACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATT 30313 Query 23458 TGAACAATAACTTCTTCACTAGGTGGATATTTTA-AATAC--TTAAACAATAAACATGCA 23514 ||| | ||||| | || || | ||| | |||| |||||||||| ||| || Sbjct 30312 GACTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCG 30256 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 |||||||||||||| ||||| || ||||| || |||||||| ||| | | ||| ||| Sbjct 30255 AAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGC 30196 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634 || | |||||||| |||| ||| ||||| || ||||| || ||||| || | ||| Sbjct 30195 ATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCT 30136 Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAt 23694 || || || ||||| || || | ||| |||| || | ||| ||||| |||||| Sbjct 30135 TCCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAA 30076 Query 23695 ttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT---GTTTC-AATTGCTTTTAA 23750 | | || ||| | ||||| ||||| || ||| | ||| | || || || || Sbjct 30075 TCTAATGCCCACTGAGCCT----TTTTAGCAACACAAGTTAAGTTGCTTATGGCGTTGAA 30020 Query 23751 GAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTC 23810 |||||| |||||| | ||| | || ||||||||||| | |||| |||||||| Sbjct 30019 GAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTC 29960 Query 23811 AGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTG 23870 ||| |||||||| || ||||| ||||| | |||||| ||||| | | | || | | || Sbjct 29959 AGAGTGAATATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTG 29900 Query 23871 AACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAA 23930 || || | || | || | || ||| ||||| || ||||| || ||||| Sbjct 29899 GACTTCTTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAA 29840 Query 23931 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATT 23990 ||| || | || || ||| ||||| | ||| || | ||| | ||||| | Sbjct 29839 GAAGGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTAT 29780 Query 23991 AATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 | |||||| |||||||| || || || || ||||||||| Sbjct 29779 GAAATCTTTGGATAAATCGACCTCTTCCACAGTCCAAAAA 29740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521482231039000