Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq14 98.7 7e-16 >seq14 Length=34464480 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | || || | || |||| |||||| || || || Sbjct 20621435 CTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 20621494 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||| || || || | ||| | |||||| || || |||||| |||| | | Sbjct 20621495 GATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACAT 20621553 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || || || | |||||||||| ||| |||||||| || || | ||||||| Sbjct 20621554 TCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCA 20621613 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 20621614 CAAATATTTGCAT 20621626 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | || || | || |||| |||||| || || || Sbjct 20637443 CTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 20637502 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||| || || || | ||| | |||||| || || |||||| |||| | | Sbjct 20637503 GATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACAT 20637561 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || || || | |||||||||| ||| |||||||| || || | ||||||| Sbjct 20637562 TCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCA 20637621 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 20637622 CAAATATTTGCAT 20637634 Score = 95.1 bits (104), Expect = 9e-15 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | | || || || || || ||| || |||||||| Sbjct 20621618 TATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTT 20621677 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || || | || |||| |||||| || || ||||||||||| || || Sbjct 20621678 GTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTG 20621737 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 || | ||| | |||||| || || |||||| |||| | ||| | || || || Sbjct 20621738 GTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACATTCTCAATAGTATCAC 20621796 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||| ||| |||||||| || || | |||||||| || |||||||| Sbjct 20621797 TAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20621854 Score = 95.1 bits (104), Expect = 9e-15 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | | || || || || || ||| || |||||||| Sbjct 20637626 TATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTT 20637685 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || || | || |||| |||||| || || ||||||||||| || || Sbjct 20637686 GTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTG 20637745 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 || | ||| | |||||| || || |||||| |||| | ||| | || || || Sbjct 20637746 GTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACATTCTCAATAGTATCAC 20637804 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||| ||| |||||||| || || | |||||||| || |||||||| Sbjct 20637805 TAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20637862 Score = 95.1 bits (104), Expect = 9e-15 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | | || || || || || ||| || |||||||| Sbjct 20637854 TATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTT 20637913 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || || | || |||| |||||| || || ||||||||||| || || Sbjct 20637914 GTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTG 20637973 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 || | ||| | |||||| || || |||||| |||| | ||| | || || || Sbjct 20637974 GTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACATTCTCAATAGTATCAC 20638032 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||| ||| |||||||| || || | |||||||| || |||||||| Sbjct 20638033 TAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 20638090 Score = 95.1 bits (104), Expect = 9e-15 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | | || || || || || ||| || |||||||| Sbjct 20638082 TATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTT 20638141 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || || | || |||| |||||| || || ||||||||||| || || Sbjct 20638142 GTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTG 20638201 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 || | ||| | |||||| || || |||||| |||| | ||| | || || || Sbjct 20638202 GTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACATTCTCAATAGTATCAC 20638260 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||| ||| |||||||| || || | |||||||| || |||||||| Sbjct 20638261 TAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCAT 20638318 Score = 95.1 bits (104), Expect = 9e-15 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | | || || || || || ||| || |||||||| Sbjct 20638310 TATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTT 20638369 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || || | || |||| |||||| || || ||||||||||| || || Sbjct 20638370 GTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTG 20638429 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 || | ||| | |||||| || || |||||| |||| | ||| | || || || Sbjct 20638430 GTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACATTCTCAATAGTATCAC 20638488 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||| ||| |||||||| || || | |||||||| || |||||||| Sbjct 20638489 TAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCAT 20638546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986517166045