Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14 136 1e-26 seq789 114 3e-20 seq1 107 5e-18 >seq14 Length=34464480 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | |||||||| || || Sbjct 20621851 CAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGA--GCCTAGTG 20621794 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20621793 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20621734 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20621733 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20621674 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 20621673 TCCAGAAAGAGTCGACTCTGCATCTTGT 20621646 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | |||||||| || || Sbjct 20637859 CAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGA--GCCTAGTG 20637802 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20637801 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20637742 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20637741 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20637682 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 20637681 TCCAGAAAGAGTCGACTCTGCATCTTGT 20637654 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | |||||||| || || Sbjct 20638087 CAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGA--GCCTAGTG 20638030 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20638029 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20637970 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20637969 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20637910 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 20637909 TCCAGAAAGAGTCGACTCTGCATCTTGT 20637882 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | |||||||| || || Sbjct 20638315 CAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGA--GCCTAGTG 20638258 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20638257 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20638198 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20638197 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20638138 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 20638137 TCCAGAAAGAGTCGACTCTGCATCTTGT 20638110 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | |||||||| || || Sbjct 20638543 CAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGA--GCCTAGTG 20638486 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20638485 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20638426 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20638425 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20638366 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 20638365 TCCAGAAAGAGTCGACTCTGCATCTTGT 20638338 Score = 132 bits (146), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | |||||||| || || Sbjct 20621623 CAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGA--GCCTAGTG 20621566 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20621565 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20621506 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20621505 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20621446 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||| || || ||||| | ||||||||||| Sbjct 20621445 TCCAGAAGGAGTCAACCTTACATCTTGTTTT 20621415 Score = 132 bits (146), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | |||||||| || || Sbjct 20637631 CAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGA--GCCTAGTG 20637574 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20637573 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20637514 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20637513 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20637454 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||| || || ||||| | ||||||||||| Sbjct 20637453 TCCAGAAGGAGTCAACCTTACATCTTGTTTT 20637423 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || | ||||| || || || || | |||||||| || || Sbjct 20622079 CAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGA--GCCTAGTG 20622022 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20622021 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20621962 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20621961 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20621902 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 20621901 TCCAGAAAGAGTCGACTCTGCATCTTGT 20621874 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || | ||||| || || || || | |||||||| || || Sbjct 20638771 CAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGA--GCCTAGTG 20638714 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 20638713 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 20638654 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 20638653 AACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 20638594 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 20638593 TCCAGAAAGAGTCGACTCTGCATCTTGT 20638566 >seq789 Length=29961 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || |||||||| || || || || || || | || Sbjct 818 CAGATTTTCGTGAAGACACTTACTGGAAAAACTATAACTCTAGAAGTTGAGCCTGCTGAT 759 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || |||||||| ||||| || ||||| ||| Sbjct 758 ACAATAGAAGCAGTTAAGGCGAAAATCCAAGATAAAGAAGGCATCCCACCAGACCAACAA 699 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| || ||||||||| | |||||| |||| || || | Sbjct 698 CGTTTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTACAATATA 639 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||||||||| |||||||| Sbjct 638 CAGAAGGAATCAACACTCCATCTTGT 613 >seq1 Length=65476681 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| ||||||||||| | || || ||||||||||| | || || | ||| | | Sbjct 54270561 CAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTG--AGCCGAGTG 54270618 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || || |||||||| || || || || || | Sbjct 54270619 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAAC 54270678 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| || ||||| || || || ||||| |||||||| | || | | ||||| || Sbjct 54270679 AACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTACAATA 54270738 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || || || |||| Sbjct 54270739 TCCAGAAAGAGTCCACTCTTCA-CTTG 54270764 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||| ||||| || | || || ||||||||||| | || || | ||| | | Sbjct 54270789 CAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTTG--AGCCGAGTG 54270846 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || || |||||||| || || || || || | Sbjct 54270847 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAAC 54270906 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 |||| || ||||| || || || ||||| |||||||| Sbjct 54270907 AACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGG 54270943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717550816690