Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4187 84.2 5e-11 >seq4187 Length=27755 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 61173 GGTGTTGCAAAACTATACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATGGAATG 61232 || ||||| ||||| ||||| || |||||| |||||| || ||||| ||||||||| Sbjct 16911 GGCGTTGCCAAACTGTACGCATATTGGATTGTGGTAAATTATCGAGAGTCTTATGGAATG 16852 Query 61233 TTTGTATGTAACTCGATTTGT-TTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGT 61291 |||| ||| || | || || | |||||||| ||||| ||| |||| | ||| || Sbjct 16851 TTTGCATGCAA-TGGAATTCTATTCAATCATGAGAGCCCCCGGCGAGGAGAAACGTTCGT 16793 Query 61292 GACTCGTAAAATTAC 61306 ||||| |||||||| Sbjct 16792 TACTCGAAAAATTAC 16778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057507461043650