Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4326 230 2e-55 >seq4326 Length=27076 Score = 230 bits (254), Expect = 2e-55 Identities = 528/777 (68%), Gaps = 26/777 (3%) Strand=Plus/Plus Query 16775 TACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCG 16834 || || ||||| | | || || || || | |||||| || || || ||||| | || | Sbjct 16115 TAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTG 16174 Query 16835 CAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACA 16894 || |||||||| || | | || || |||||||| | ||||| || ||||| | | Sbjct 16175 CAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA 16234 Query 16895 ACCGCTTC-CTTAATAAT-ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952 ||||| || |||| || | ||| |||| ||||||| ||| || | | ||| ||||| Sbjct 16235 ACCGCCTCTCTTATTATTGACT--CAACACGTTCCTTGGAAGGCTTTTTGATAATATGTT 16292 Query 16953 TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAG 17012 |||| | ||||| |||||||| ||||||| ||| |||||||| ||||| | ||| || Sbjct 16293 TAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGC 16352 Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072 ||| | || || ||||| ||||||||||| | ||| ||||| || ||||| | Sbjct 16353 TAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTAC 16412 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT 17132 |||||||||| | ||| || || | |||||| || ||||| ||||| || | || | Sbjct 16413 CAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAG--- 16469 Query 17133 CTTTG---TTACGAATCCATTTCTGCACCCACTCGGC--TTTTTGCTTTATGCAATCCAT 17187 |||| | | |||||| | |||||| || ||||||| | ||| | Sbjct 16470 ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC--AACACAAGTTA- 16526 Query 17188 CGTTTC-TATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATC 17244 ||| | |||||| || | | || || |||| | || | ||| | || || ||||| Sbjct 16527 AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCT-TTGGA-GTCTTTGATGTATGTATC 16584 Query 17245 GATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304 || | || ||||||||| ||||| || ||||| || |||||||| | || ||||| Sbjct 16585 AATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAA 16644 Query 17305 GCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCAC 17364 ||| || | || | || || ||||| | ||| ||||| || || ||| || Sbjct 16645 GCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTAC 16704 Query 17365 GATGCCGTCGCTCGCGGCGAAAAACGCCAATA--TATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| ||||| || || || || || | || | | ||||||| ||| | Sbjct 16705 AATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGAT--ATGAAATGACGTTCCCCA 16762 Query 17423 GGTGTAAG-AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 | || || | ||| | | | ||||||||| | |||||| ||||| ||||| Sbjct 16763 ACCTTGAGCGACTC-CCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCA 16821 Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||| ||| || ||||| ||||| | || ||| | ||| | ||||| ||||||||| Sbjct 16822 AAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGAA 16878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517394509031400