Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 230 2e-55
>seq4326
Length=27076
Score = 230 bits (254), Expect = 2e-55
Identities = 528/777 (68%), Gaps = 26/777 (3%)
Strand=Plus/Plus
Query 16775 TACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCG 16834
|| || ||||| | | || || || || | |||||| || || || ||||| | || |
Sbjct 16115 TAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTG 16174
Query 16835 CAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACA 16894
|| |||||||| || | | || || |||||||| | ||||| || ||||| | |
Sbjct 16175 CAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA 16234
Query 16895 ACCGCTTC-CTTAATAAT-ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952
||||| || |||| || | ||| |||| ||||||| ||| || | | ||| |||||
Sbjct 16235 ACCGCCTCTCTTATTATTGACT--CAACACGTTCCTTGGAAGGCTTTTTGATAATATGTT 16292
Query 16953 TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAG 17012
|||| | ||||| |||||||| ||||||| ||| |||||||| ||||| | ||| ||
Sbjct 16293 TAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGC 16352
Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072
||| | || || ||||| ||||||||||| | ||| ||||| || ||||| |
Sbjct 16353 TAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTAC 16412
Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT 17132
|||||||||| | ||| || || | |||||| || ||||| ||||| || | || |
Sbjct 16413 CAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAG--- 16469
Query 17133 CTTTG---TTACGAATCCATTTCTGCACCCACTCGGC--TTTTTGCTTTATGCAATCCAT 17187
|||| | | |||||| | |||||| || ||||||| | ||| |
Sbjct 16470 ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC--AACACAAGTTA- 16526
Query 17188 CGTTTC-TATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATC 17244
||| | |||||| || | | || || |||| | || | ||| | || || |||||
Sbjct 16527 AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCT-TTGGA-GTCTTTGATGTATGTATC 16584
Query 17245 GATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304
|| | || ||||||||| ||||| || ||||| || |||||||| | || |||||
Sbjct 16585 AATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAA 16644
Query 17305 GCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCAC 17364
||| || | || | || || ||||| | ||| ||||| || || ||| ||
Sbjct 16645 GCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTAC 16704
Query 17365 GATGCCGTCGCTCGCGGCGAAAAACGCCAATA--TATGCTTAATGAAATATTTTTCGTCC 17422
|| ||||| ||||| || || || || || | || | | ||||||| ||| |
Sbjct 16705 AATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGAT--ATGAAATGACGTTCCCCA 16762
Query 17423 GGTGTAAG-AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481
| || || | ||| | | | ||||||||| | |||||| ||||| |||||
Sbjct 16763 ACCTTGAGCGACTC-CCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCA 16821
Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
|||| ||| || ||||| ||||| | || ||| | ||| | ||||| |||||||||
Sbjct 16822 AAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGAA 16878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517394509031400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |