Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4326 264 1e-65 >seq4326 Length=27076 Score = 264 bits (292), Expect = 1e-65 Identities = 513/753 (68%), Gaps = 6/753 (1%) Strand=Plus/Plus Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT 16093 || ||||| | |||||| || || |||||||| | | |||||| ||||| || | | Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 || || ||||||| || |||||| | |||||||| | |||||| ||| | || || Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTGAC 16255 Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | ||| | || || | | | | | |||||||| | |||||| ||||| || Sbjct 16256 TCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCA 16315 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 |||||||||||||||||||| ||||| | ||| ||| ||||| | || ||||| Sbjct 16316 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 16375 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 ||||||||||| | ||||||||| || || || || |||||||| | ||| || || Sbjct 16376 CCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACT 16435 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||||||| ||||| ||||| || | |||| | || | |||||| | | Sbjct 16436 GCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAAT 16495 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC-TATGGCCTT--AAACAATTTC 16450 |||| | || |||| | | |||| | ||| | |||||| || | | || || Sbjct 16496 GCCCACTGAGCCTTTTTTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTC 16554 Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510 |||| | || || | || || |||||||| | |||| ||||||||| ||||| Sbjct 16555 CCTTTCTTTGGA--GTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGA 16612 Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 || ||||| || |||||||| | ||||| ||||| ||| |||| | || || ||||| Sbjct 16613 ATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCT 16672 Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630 | || ||||| |||||||| || || |||||||| || ||||| || || Sbjct 16673 TGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCT 16732 Query 16631 AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690 || | || ||||||| ||| || | || | ||||| | | | |||| Sbjct 16733 AACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCT 16792 Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTC 16750 ||||| | |||||| ||||| |||||||| ||| || ||||| ||||| | | | Sbjct 16793 TTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGC 16852 Query 16751 CAAATATCATTGTATTGTATGGGAAATACGACG 16783 || | ||| | ||||| |||||| || | |||| Sbjct 16853 CAGACATCGTGGTATTCTATGGGGAAAAGGACG 16885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511265098958600