Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 264 1e-65
>seq4326
Length=27076
Score = 264 bits (292), Expect = 1e-65
Identities = 513/753 (68%), Gaps = 6/753 (1%)
Strand=Plus/Plus
Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT 16093
|| ||||| | |||||| || || |||||||| | | |||||| ||||| || | |
Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195
Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153
|| || ||||||| || |||||| | |||||||| | |||||| ||| | || ||
Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTGAC 16255
Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213
| ||| | || || | | | | | |||||||| | |||||| ||||| ||
Sbjct 16256 TCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCA 16315
Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273
|||||||||||||||||||| ||||| | ||| ||| ||||| | || |||||
Sbjct 16316 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 16375
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
||||||||||| | ||||||||| || || || || |||||||| | ||| || ||
Sbjct 16376 CCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACT 16435
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393
| ||||||||| ||||| ||||| || | |||| | || | |||||| | |
Sbjct 16436 GCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAAT 16495
Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC-TATGGCCTT--AAACAATTTC 16450
|||| | || |||| | | |||| | ||| | |||||| || | | || ||
Sbjct 16496 GCCCACTGAGCCTTTTTTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTC 16554
Query 16451 TCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGT 16510
|||| | || || | || || |||||||| | |||| ||||||||| |||||
Sbjct 16555 CCTTTCTTTGGA--GTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGA 16612
Query 16511 ATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570
|| ||||| || |||||||| | ||||| ||||| ||| |||| | || || |||||
Sbjct 16613 ATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCT 16672
Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630
| || ||||| |||||||| || || |||||||| || ||||| || ||
Sbjct 16673 TGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCT 16732
Query 16631 AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690
|| | || ||||||| ||| || | || | ||||| | | | ||||
Sbjct 16733 AACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCT 16792
Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTC 16750
||||| | |||||| ||||| |||||||| ||| || ||||| ||||| | | |
Sbjct 16793 TTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGC 16852
Query 16751 CAAATATCATTGTATTGTATGGGAAATACGACG 16783
|| | ||| | ||||| |||||| || | ||||
Sbjct 16853 CAGACATCGTGGTATTCTATGGGGAAAAGGACG 16885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511265098958600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |