Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4326 233 2e-56 seq973 114 2e-20 >seq4326 Length=27076 Score = 233 bits (258), Expect = 2e-56 Identities = 508/750 (68%), Gaps = 13/750 (2%) Strand=Plus/Plus Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026 || ||||||| ||| || || || ||||| || ||||||||||| || | | Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195 Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 24085 ||||| ||||| | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGA 16254 Query 24086 TCTTACT-GTTTCTTCACTCGGTGGATACAATAA-ATGTTTAAACATCAAACATGCGAAA 24143 || ||| ||| | | | |||| ||||||||| | | ||| |||||| Sbjct 16255 CTCAACACGTTCCTTGGAAGGCTTTTTG--ATAATATGTTTAAATAATAGACAAGCGAAA 16312 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203 || || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 16313 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 16372 Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 24263 || || || || |||||||| ||||| | || || ||||||||||||| ||||| Sbjct 16373 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCC 16432 Query 24264 ACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTT 24320 ||||| ||||| ||||| | | |||| || || | || || | ||||| | | Sbjct 16433 ACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCT 16492 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGAT 24378 ||||| | ||||| ||| ||||||| | ||| || ||| || || |||||| Sbjct 16493 AATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAA 16550 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 ||| |||| || ||||| | ||||||||||| || | | |||||||| || | Sbjct 16551 AGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGT 16610 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 |||| || || || || || || | || || || || | | |||| | ||||| |||| Sbjct 16611 GAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTT 16670 Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 || | || |||||| | || || || ||||||||||| || ||||| || | Sbjct 16671 CTTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAG 16730 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 24618 | || || | ||| |||| ||| | | || | ||||| ||| || Sbjct 16731 CTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGAT 16790 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 |||| || | |||||| |||||||| |||||||| || || | ||||| ||||| | || Sbjct 16791 CTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAAT 16850 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAA 24708 ||||| || || |||| || || |||| Sbjct 16851 GCCAGACATCGTGGTATTCTATGGGGAAAA 16880 >seq973 Length=64032 Score = 114 bits (126), Expect = 2e-20 Identities = 188/268 (70%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATT 54294 || |||||| ||| | ||||| || || | || ||| | ||| ||| || || || Sbjct 13386 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTG---CGGATGTT 13442 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | || || || || ||||| || ||||||| || | ||| ||| ||| ||||| Sbjct 13443 ATGAACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGT 13502 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TT 54412 ||| || ||||| ||||||||||| || |||| | | |||||||| || || | | Sbjct 13503 ATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTG 13562 Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 |||| | |||||| || ||||| | || || ||||| || ||||||||||||||| Sbjct 13563 TGGTTTGG--GAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCA 13620 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTG 54500 || | || || ||||||| || || || Sbjct 13621 GACATCAGGTTATACGTCTAGAAAGTTG 13648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593548270400400