Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 233 2e-56
seq973 114 2e-20
>seq4326
Length=27076
Score = 233 bits (258), Expect = 2e-56
Identities = 508/750 (68%), Gaps = 13/750 (2%)
Strand=Plus/Plus
Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026
|| ||||||| ||| || || || ||||| || ||||||||||| || | |
Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195
Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 24085
||||| ||||| | | | ||| || ||||| || ||| ||||| ||| |||| || ||
Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGA 16254
Query 24086 TCTTACT-GTTTCTTCACTCGGTGGATACAATAA-ATGTTTAAACATCAAACATGCGAAA 24143
|| ||| ||| | | | |||| ||||||||| | | ||| ||||||
Sbjct 16255 CTCAACACGTTCCTTGGAAGGCTTTTTG--ATAATATGTTTAAATAATAGACAAGCGAAA 16312
Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203
|| || ||||| || ||||||||||| |||||||| ||| ||| | ||||| |||||
Sbjct 16313 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 16372
Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 24263
|| || || || |||||||| ||||| | || || ||||||||||||| |||||
Sbjct 16373 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCC 16432
Query 24264 ACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTT 24320
||||| ||||| ||||| | | |||| || || | || || | ||||| | |
Sbjct 16433 ACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCT 16492
Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGAT 24378
||||| | ||||| ||| ||||||| | ||| || ||| || || ||||||
Sbjct 16493 AATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAA 16550
Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438
||| |||| || ||||| | ||||||||||| || | | |||||||| || |
Sbjct 16551 AGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGT 16610
Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498
|||| || || || || || || | || || || || | | |||| | ||||| ||||
Sbjct 16611 GAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTT 16670
Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558
|| | || |||||| | || || || ||||||||||| || ||||| || |
Sbjct 16671 CTTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAG 16730
Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 24618
| || || | ||| |||| ||| | | || | ||||| ||| ||
Sbjct 16731 CTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGAT 16790
Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678
|||| || | |||||| |||||||| |||||||| || || | ||||| ||||| | ||
Sbjct 16791 CTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAAT 16850
Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAA 24708
||||| || || |||| || || ||||
Sbjct 16851 GCCAGACATCGTGGTATTCTATGGGGAAAA 16880
>seq973
Length=64032
Score = 114 bits (126), Expect = 2e-20
Identities = 188/268 (70%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATT 54294
|| |||||| ||| | ||||| || || | || ||| | ||| ||| || || ||
Sbjct 13386 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTG---CGGATGTT 13442
Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354
| || || || || ||||| || ||||||| || | ||| ||| ||| |||||
Sbjct 13443 ATGAACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGT 13502
Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TT 54412
||| || ||||| ||||||||||| || |||| | | |||||||| || || | |
Sbjct 13503 ATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTG 13562
Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472
|||| | |||||| || ||||| | || || ||||| || |||||||||||||||
Sbjct 13563 TGGTTTGG--GAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCA 13620
Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTG 54500
|| | || || ||||||| || || ||
Sbjct 13621 GACATCAGGTTATACGTCTAGAAAGTTG 13648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593548270400400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |