Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4326 120 3e-22 >seq4326 Length=27076 Score = 120 bits (132), Expect = 3e-22 Identities = 387/598 (65%), Gaps = 2/598 (0%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| | ||| ||||| ||||||||||| |||||| || | |||| | || || Sbjct 16899 AACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAG 16840 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| | || || || ||||| || || |||||||| ||||||| || | | Sbjct 16839 AAGGCTGTAGCTTCTTTTTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATACAT 16780 Query 116714 TGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 |||||| ||| | || | || || |||||||| ||||| | || || || || Sbjct 16779 TGGGAGTCGC-TCAAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGC 16721 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 || || ||||| || || |||||| || | || || ||| || || || ||| | Sbjct 16720 GGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGCTTCAGCCAAGAAGTCCAGAT 16661 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | |||| || ||||| || || | ||||| || || ||||| | ||||| ||||| Sbjct 16660 CCCAGAGGTTCGTTGCTTTTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAAT 16601 Query 116893 GTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAA 116952 ||| || | || || || ||| | || | || | | | | | || || Sbjct 16600 GTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGAAAGGGACTTTCTCTTCAA 16541 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 |||||| | | | || || | | ||||| ||||||| | ||||| | Sbjct 16540 CGCCATAAGCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGCATTAGATTGGATTGG 16481 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | | | | || | || || | | || || || || || || || || || Sbjct 16480 AGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTT 16421 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 |||||| || || ||||| || ||||| ||||| |||||||| || || ||||| || || Sbjct 16420 CTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACT 16361 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 | |||| ||||| || | ||| || ||||| || || ||||| || || || ||| Sbjct 16360 GTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGT 16303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515068788194800