Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4326 273 2e-68 >seq4326 Length=27076 Score = 273 bits (302), Expect = 2e-68 Identities = 588/876 (67%), Gaps = 56/876 (6%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||||||||| ||||| ||| ||||| || ||||| |||||||| | ||| |||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGT-------------------------ATT 16040 |||||| ||||||||||| | ||| ||| ||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 16041 TA-------TCGCATC-CCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACT 16091 || | ||| |||| | |||| | || || || || | |||||| || |||| Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 16092 GTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt 16151 | ||| | | || |||||||| ||||| | || || | ||||||| |||||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 16152 ttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGG- 16210 | |||||| |||||| || | ||||| | || | || | || ||| || Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTAT-TGACTCAACACGTTCCTT---GGAAGGC 16276 Query 16211 --TTTAATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTA 16267 ||| |||| |||||||| | || |||||| ||||||||||| | ||||||||| ||| Sbjct 16277 TTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 16336 Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 || ||||| || || ||| | || || ||||| || |||||||| |||| ||| ||| Sbjct 16337 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 16396 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 ||||| || || |||||||||||| | |||||| ||||| ||||| |||| || || Sbjct 16397 ATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 16456 Query 16388 TCACCGTACGTTCTAtttttact-ttctatccattttttagcccaatttgctttttgttt 16446 || | | | | |||| | | | | ||||| | | ||||| | || |||| | Sbjct 16457 TCTGCAAAAG-TAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 16515 Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506 |||||| | | ||| ||| || || || | | | | |||||||| ||| || Sbjct 16516 AACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575 Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 || ||||| |||| |||| |||||||| || ||||||||||| || |||||||| | Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTT 16626 ||||||||||| | | | || | || || ||||| | || | |||| | ||| Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695 Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttt 16686 ||| || ||||| || || || ||||| || || | | || || ||| | Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAA----T 16751 Query 16687 ttCGTTATCTGAAAGTTTTAACCAGTCAGAA------AAATCTTTTGATAAATCGACCTC 16740 ||| || || || | | | || || | |||||| || ||||| ||||| Sbjct 16752 GACGT--TCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTC 16809 Query 16741 TTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 ||| ||||||||||||||||| |||||||| ||||| Sbjct 16810 TTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462376975403000