Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 273 2e-68
>seq4326
Length=27076
Score = 273 bits (302), Expect = 2e-68
Identities = 588/876 (67%), Gaps = 56/876 (6%)
Strand=Plus/Plus
Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005
||||||||||| ||||| ||| ||||| || ||||| |||||||| | ||| ||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGT-------------------------ATT 16040
|||||| ||||||||||| | ||| ||| |||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 16041 TA-------TCGCATC-CCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACT 16091
|| | ||| |||| | |||| | || || || || | |||||| || ||||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 16092 GTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt 16151
| ||| | | || |||||||| ||||| | || || | ||||||| |||||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 16152 ttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGG- 16210
| |||||| |||||| || | ||||| | || | || | || ||| ||
Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTAT-TGACTCAACACGTTCCTT---GGAAGGC 16276
Query 16211 --TTTAATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTA 16267
||| |||| |||||||| | || |||||| ||||||||||| | ||||||||| |||
Sbjct 16277 TTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 16336
Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327
|| ||||| || || ||| | || || ||||| || |||||||| |||| ||| |||
Sbjct 16337 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 16396
Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387
||||| || || |||||||||||| | |||||| ||||| ||||| |||| || ||
Sbjct 16397 ATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 16456
Query 16388 TCACCGTACGTTCTAtttttact-ttctatccattttttagcccaatttgctttttgttt 16446
|| | | | | |||| | | | | ||||| | | ||||| | || |||| |
Sbjct 16457 TCTGCAAAAG-TAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 16515
Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506
|||||| | | ||| ||| || || || | | | | |||||||| ||| ||
Sbjct 16516 AACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566
|| ||||| |||| |||| |||||||| || ||||||||||| || |||||||| |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTT 16626
||||||||||| | | | || | || || ||||| | || | |||| | |||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695
Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttt 16686
||| || ||||| || || || ||||| || || | | || || ||| |
Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAA----T 16751
Query 16687 ttCGTTATCTGAAAGTTTTAACCAGTCAGAA------AAATCTTTTGATAAATCGACCTC 16740
||| || || || | | | || || | |||||| || ||||| |||||
Sbjct 16752 GACGT--TCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTC 16809
Query 16741 TTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776
||| ||||||||||||||||| |||||||| |||||
Sbjct 16810 TTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462376975403000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |