Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 214 2e-50
>seq4326
Length=27076
Score = 214 bits (236), Expect = 2e-50
Identities = 463/686 (67%), Gaps = 50/686 (7%)
Strand=Plus/Plus
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||||||||| ||||| || ||||| ||||| || || ||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 13975 CATAAAATCAAATGGATTTGT-----TGACA----TAAAC-------------------- 14005
|||||| ||||| ||||| || ||| | |||||
Sbjct 16041 CATAAAGTCAAAAGGATT-GTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAAT 16099
Query 14006 ------ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATAT 14059
|| || ||| |||| ||||| | ||||| || || || || || ||||| ||
Sbjct 16100 TTACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTAC 16159
Query 14060 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 14119
||| |||| | | |||||||| || |||| | || || | | | ||||||
Sbjct 16160 TGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAAC 16219
Query 14120 TCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGG 14178
|| | |||||| ||| || ||||| |||| || | || | ||| || |||||
Sbjct 16220 TCCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTT 16278
Query 14179 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 14238
| | | ||||||||| | || ||| || ||||||||||| || || || ||||||||
Sbjct 16279 TTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338
Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298
|| | ||| || ||| | | ||| ||||| | |||||||| || | ||| |||||
Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398
Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358
|| ||||| || |||||||| | || || ||||| ||||| || ||||| |||||
Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458
Query 14359 TCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417
| |||| | | ||| | || | ||||| | | ||||| | || |||||| ||
Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517
Query 14418 TAAAA--TCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT--AGTACTTGA 14472
| || | ||| || || || || || | || || |||| ||||| ||| |||
Sbjct 16518 CACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG- 16573
Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532
|||||||||||||| | ||| |||||||||||||| || || || |||||||||||
Sbjct 16574 -ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTG 16632
Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558
| |||||||| || | | | ||||
Sbjct 16633 CATCCCATAAAAGCAACGAACCTCTG 16658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482204785231400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |