Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4326 214 2e-50 >seq4326 Length=27076 Score = 214 bits (236), Expect = 2e-50 Identities = 463/686 (67%), Gaps = 50/686 (7%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||||||||| ||||| || ||||| ||||| || || ||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 13975 CATAAAATCAAATGGATTTGT-----TGACA----TAAAC-------------------- 14005 |||||| ||||| ||||| || ||| | ||||| Sbjct 16041 CATAAAGTCAAAAGGATT-GTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAAT 16099 Query 14006 ------ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATAT 14059 || || ||| |||| ||||| | ||||| || || || || || ||||| || Sbjct 16100 TTACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTAC 16159 Query 14060 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 14119 ||| |||| | | |||||||| || |||| | || || | | | |||||| Sbjct 16160 TGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAAC 16219 Query 14120 TCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGG 14178 || | |||||| ||| || ||||| |||| || | || | ||| || ||||| Sbjct 16220 TCCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTT 16278 Query 14179 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 14238 | | | ||||||||| | || ||| || ||||||||||| || || || |||||||| Sbjct 16279 TTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338 Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398 Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358 || ||||| || |||||||| | || || ||||| ||||| || ||||| ||||| Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458 Query 14359 TCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 | |||| | | ||| | || | ||||| | | ||||| | || |||||| || Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517 Query 14418 TAAAA--TCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT--AGTACTTGA 14472 | || | ||| || || || || || | || || |||| ||||| ||| ||| Sbjct 16518 CACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG- 16573 Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||||||||||| | ||| |||||||||||||| || || || ||||||||||| Sbjct 16574 -ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTG 16632 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 | |||||||| || | | | |||| Sbjct 16633 CATCCCATAAAAGCAACGAACCTCTG 16658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482204785231400