Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 109 5e-19
seq4612 104 2e-17
seq6368 102 7e-17
>seq13659
Length=5019
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || |||||||| ||||||| || ||||| || | || ||||| ||
Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | || | || ||| || || ||||| ||||| | || || |||||
Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 1206
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| ||| | ||||||||||| || ||||||||||| | | | ||| || || || ||
Sbjct 1205 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 1147
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|||||| ||||| |||||||| ||||| || |||
Sbjct 1146 CATTCAGAAAGAGTCGACTCTGCATCTTGTCCTT 1113
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| |||| || || |||||||| | || ||||| ||
Sbjct 1097 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 1038
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | || | || ||| || || ||||| ||||| | || || |||||
Sbjct 1037 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 978
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| ||| | ||||||||||| || ||||||||||| | | | ||| || || || ||
Sbjct 977 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 919
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || ||||| || || | ||||| || ||
Sbjct 918 CATCCAGAAAGAGTCAACCTTACATCTTGTTCT 886
>seq4612
Length=25615
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| |||| || || |||||||| | || ||||| ||
Sbjct 15502 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15561
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | || | || ||| || || ||||| ||||| | || || |||||
Sbjct 15562 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15621
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| ||| | ||||||||||| || ||||||||||| | | | ||| || ||||| ||
Sbjct 15622 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGATTACAA 15680
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||| || ||||| |||||||| ||||| || |||
Sbjct 15681 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 15714
Score = 100 bits (110), Expect = 3e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| |||| || || |||||||| | || ||||| ||
Sbjct 15274 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15333
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | || | || ||| || || ||||| ||||| | || || |||||
Sbjct 15334 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15393
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| ||| | ||||||||||| || ||||||||||| | | | ||| || || || ||
Sbjct 15394 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 15452
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||| || ||||| |||||||| ||||| || |||
Sbjct 15453 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 15486
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| |||| || || |||||||| | || ||||| ||
Sbjct 15730 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15789
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | | || | || ||| || || ||||| ||||| | || || |||||
Sbjct 15790 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15849
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| ||| | ||||||||||| || ||||||||||| | | | ||| || ||||| ||
Sbjct 15850 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGATTACAA 15908
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || ||||| || || | ||||| || ||
Sbjct 15909 CATCCAGAAAGAGTCAACCTTACATCTTGTTCT 15941
>seq6368
Length=18664
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| || || || ||||| || ||| | || ||||| || |
Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | ||| | || || || ||| || || |||||| | || || |||||
Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| |||||||| || ||||||||||| ||||||| | | | ||| | ||| |||||
Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGA-TGGACGAACTCTTTCCGACTATAA 808
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||||| || |||||||| || ||
Sbjct 809 TATACAGAAGGAATCAACACTTCATCTTGTCCT 841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445636264071600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |