Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13659 109 5e-19 seq4612 104 2e-17 seq6368 102 7e-17 >seq13659 Length=5019 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || |||||||| ||||||| || ||||| || | || ||||| || Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 1206 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | ||||||||||| || ||||||||||| | | | ||| || || || || Sbjct 1205 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 1147 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| ||||| |||||||| ||||| || ||| Sbjct 1146 CATTCAGAAAGAGTCGACTCTGCATCTTGTCCTT 1113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || ||||| || Sbjct 1097 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 1038 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 1037 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 978 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | ||||||||||| || ||||||||||| | | | ||| || || || || Sbjct 977 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 919 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || | ||||| || || Sbjct 918 CATCCAGAAAGAGTCAACCTTACATCTTGTTCT 886 >seq4612 Length=25615 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || ||||| || Sbjct 15502 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15561 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 15562 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15621 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | ||||||||||| || ||||||||||| | | | ||| || ||||| || Sbjct 15622 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGATTACAA 15680 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 15681 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 15714 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || ||||| || Sbjct 15274 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15333 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 15334 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15393 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | ||||||||||| || ||||||||||| | | | ||| || || || || Sbjct 15394 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 15452 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 15453 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 15486 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || ||||| || Sbjct 15730 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15789 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 15790 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15849 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | ||||||||||| || ||||||||||| | | | ||| || ||||| || Sbjct 15850 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGATTACAA 15908 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || | ||||| || || Sbjct 15909 CATCCAGAAAGAGTCAACCTTACATCTTGTTCT 15941 >seq6368 Length=18664 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| || ||| | || ||||| || | Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | ||| | || || || ||| || || |||||| | || || ||||| Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || |||||||| || ||||||||||| ||||||| | | | ||| | ||| ||||| Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGA-TGGACGAACTCTTTCCGACTATAA 808 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || |||||||| || || Sbjct 809 TATACAGAAGGAATCAACACTTCATCTTGTCCT 841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445636264071600