Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 230 3e-55
seq973 107 2e-18
>seq4326
Length=27076
Score = 230 bits (254), Expect = 3e-55
Identities = 608/926 (66%), Gaps = 43/926 (5%)
Strand=Plus/Plus
Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352
||| |||||||| || || || || ||||| || || |||||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 33353 CATGAAATCAAACGGATTG---------------------GTAAC-ATT----GTAAAtt 33386
||| || ||||| |||||| | ||| ||| | |||||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 33387 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATG 33438
| ||| | | || | |||| | | || ||||||| ||||| || ||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 33439 TTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATT 33498
||||| || ||||||||||| || | | ||||| ||||| | | | ||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 33499 CTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACG-GTTTCTTCACTCGGTGGA 33557
| ||||| || ||||| | | |||| || | ||| ||| ||| | |
Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280
Query 33558 TGTAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACT 33616
|| |||| ||||||||| | | ||| |||||||| || || || || |||||||||||
Sbjct 16281 TG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338
Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676
|||||||| || ||| | ||||| ||||| || || || || |||||||| |||||
Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398
Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736
| ||||| || |||||||| | ||||| ||||| ||||| ||||| | | ||
Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458
Query 33737 TCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793
| || || | || || | ||||| | | ||||| | ||||| ||| ||
Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518
Query 33794 ACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33852
||||| | ||| | |||||| || |||||| ||| |||| || ||||| | |
Sbjct 16519 ACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 16577
Query 33853 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33912
| ||||| || || | | |||||||| || ||||| || || || || ||||| | |
Sbjct 16578 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 16637
Query 33913 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTT 33972
| || || || | | |||| | ||||| |||||| | || |||||| | || |
Sbjct 16638 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTCT 16697
Query 33973 CATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 34032
| || ||||| ||||| || ||||| || || || || | ||| |||| ||
Sbjct 16698 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 16757
Query 34033 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 34092
| | | || | ||||| ||| |||||| || | |||||| |||||||| |
Sbjct 16758 CCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAG 16817
Query 34093 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 34152
||||||| || || | ||||| ||||| | || ||||| || || |||| || ||||
Sbjct 16818 TCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGA 16877
Query 34153 AAATAACAAATCTATTTGGATTTGGT 34178
||| || || | | ||| ||||||
Sbjct 16878 AAAGGACGAAACGGTGTGGGTTTGGT 16903
>seq973
Length=64032
Score = 107 bits (118), Expect = 2e-18
Identities = 134/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605
|| || ||||| || ||||||| || | ||| ||| ||| ||||| || || ||||||
Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515
Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665
||||| ||||| || |||| | | |||||||| || || | || | | ||||
Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTT 13575
Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725
|| || ||||| | || || ||||| || ||||||||||||||||| | || || |||
Sbjct 13576 CCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTATAC 13635
Query 63726 GTCT 63729
||||
Sbjct 13636 GTCT 13639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629633732624400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |