Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4326 230 3e-55 seq973 107 2e-18 >seq4326 Length=27076 Score = 230 bits (254), Expect = 3e-55 Identities = 608/926 (66%), Gaps = 43/926 (5%) Strand=Plus/Plus Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||| |||||||| || || || || ||||| || || |||||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 33353 CATGAAATCAAACGGATTG---------------------GTAAC-ATT----GTAAAtt 33386 ||| || ||||| |||||| | ||| ||| | ||||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 33387 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATG 33438 | ||| | | || | |||| | | || ||||||| ||||| || || Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 33439 TTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATT 33498 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 33499 CTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACG-GTTTCTTCACTCGGTGGA 33557 | ||||| || ||||| | | |||| || | ||| ||| ||| | | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280 Query 33558 TGTAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACT 33616 || |||| ||||||||| | | ||| |||||||| || || || || ||||||||||| Sbjct 16281 TG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338 Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676 |||||||| || ||| | ||||| ||||| || || || || |||||||| ||||| Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398 Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 | ||||| || |||||||| | ||||| ||||| ||||| ||||| | | || Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458 Query 33737 TCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 | || || | || || | ||||| | | ||||| | ||||| ||| || Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518 Query 33794 ACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33852 ||||| | ||| | |||||| || |||||| ||| |||| || ||||| | | Sbjct 16519 ACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 16577 Query 33853 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33912 | ||||| || || | | |||||||| || ||||| || || || || ||||| | | Sbjct 16578 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 16637 Query 33913 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTT 33972 | || || || | | |||| | ||||| |||||| | || |||||| | || | Sbjct 16638 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTCT 16697 Query 33973 CATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 34032 | || ||||| ||||| || ||||| || || || || | ||| |||| || Sbjct 16698 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 16757 Query 34033 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 34092 | | | || | ||||| ||| |||||| || | |||||| |||||||| | Sbjct 16758 CCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAG 16817 Query 34093 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 34152 ||||||| || || | ||||| ||||| | || ||||| || || |||| || |||| Sbjct 16818 TCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGA 16877 Query 34153 AAATAACAAATCTATTTGGATTTGGT 34178 ||| || || | | ||| |||||| Sbjct 16878 AAAGGACGAAACGGTGTGGGTTTGGT 16903 >seq973 Length=64032 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || ||||| || ||||||| || | ||| ||| ||| ||||| || || |||||| Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 ||||| ||||| || |||| | | |||||||| || || | || | | |||| Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTT 13575 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || || ||||| | || || ||||| || ||||||||||||||||| | || || ||| Sbjct 13576 CCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTATAC 13635 Query 63726 GTCT 63729 |||| Sbjct 13636 GTCT 13639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629633732624400