Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4326 210 2e-49 seq973 109 5e-19 >seq4326 Length=27076 Score = 210 bits (232), Expect = 2e-49 Identities = 457/683 (67%), Gaps = 47/683 (7%) Strand=Plus/Plus Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400 ||||||||||| |||||| || ||||| || ||||| ||||| | |||||||| || Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 11401 CATAAAGCTAAAAGGATTAT-------ATACATTGAAG---------------------- 11431 ||||||| ||||||||| | |||||| || Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 11432 -----ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 || |||||| |||| | || || || || ||||||| ||||| || |||| Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 11487 GAGACATTAAACAACAATTCATACCTAT-AAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 || |||| | |||||||| || || ||| | || || | ||| ||| |||||| Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTG-ACTGGTAGAGCTTCTGATAAAAAC 16219 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGA 11605 |||| |||||| |||||| || | ||||| ||| | | |||||| || || Sbjct 16220 TCCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279 Query 11606 TGTAATAA-ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 | | |||| ||||||||| | || ||| || ||||||||||||| |||||||||||||| Sbjct 16280 T-TGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 |||| |||||| ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 ||| || || |||||||||||| | || ||||| |||||||| || | || | ||| Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458 Query 11785 TCCA----TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 | || || | | | || | ||||| | | ||||| | ||| || ||| | Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517 Query 11841 CGCA--TTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || || ||| | ||| ||||| || | | ||||| | ||| | | Sbjct 16518 CACAAGTTAAGTTGCT--TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 |||||||| ||||||||| |||||||| || |||||||| || |||||||| || | Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635 Query 11959 TCCATAGAAACATCGTGCCTCTG 11981 ||||| || || || |||||| Sbjct 16636 CCCATAAAAGCAACGAACCTCTG 16658 >seq973 Length=64032 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACC 38354 ||| || || || |||| ||| ||||| | || |||| ||| |||||||| | || || Sbjct 13455 TCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCC 13514 Query 38355 TTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGT 38414 ||||||||| || || || || | | | ||||||||| || | || || ||||| Sbjct 13515 TTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGGAGT 13574 Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 ||| |||||||| | ||| || || |||||| | ||||||||||| |||| Sbjct 13575 TCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 13624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468388020041200