Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 210 2e-49
seq973 109 5e-19
>seq4326
Length=27076
Score = 210 bits (232), Expect = 2e-49
Identities = 457/683 (67%), Gaps = 47/683 (7%)
Strand=Plus/Plus
Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400
||||||||||| |||||| || ||||| || ||||| ||||| | |||||||| ||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 11401 CATAAAGCTAAAAGGATTAT-------ATACATTGAAG---------------------- 11431
||||||| ||||||||| | |||||| ||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 11432 -----ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486
|| |||||| |||| | || || || || ||||||| ||||| || ||||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 11487 GAGACATTAAACAACAATTCATACCTAT-AAGATCCACCGGAATAGCAACTGTCAAAAAC 11545
|| |||| | |||||||| || || ||| | || || | ||| ||| ||||||
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTG-ACTGGTAGAGCTTCTGATAAAAAC 16219
Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGA 11605
|||| |||||| |||||| || | ||||| ||| | | |||||| || ||
Sbjct 16220 TCCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279
Query 11606 TGTAATAA-ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664
| | |||| ||||||||| | || ||| || ||||||||||||| ||||||||||||||
Sbjct 16280 T-TGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338
Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724
|||| |||||| ||| | | ||| ||||| | |||||||| || | ||| |||||
Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398
Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784
||| || || |||||||||||| | || ||||| |||||||| || | || | |||
Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458
Query 11785 TCCA----TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840
| || || | | | || | ||||| | | ||||| | ||| || ||| |
Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517
Query 11841 CGCA--TTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898
| || || ||| | ||| ||||| || | | ||||| | ||| | |
Sbjct 16518 CACAAGTTAAGTTGCT--TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958
|||||||| ||||||||| |||||||| || |||||||| || |||||||| || |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 11959 TCCATAGAAACATCGTGCCTCTG 11981
||||| || || || ||||||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTG 16658
>seq973
Length=64032
Score = 109 bits (120), Expect = 5e-19
Identities = 126/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACC 38354
||| || || || |||| ||| ||||| | || |||| ||| |||||||| | || ||
Sbjct 13455 TCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCC 13514
Query 38355 TTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGT 38414
||||||||| || || || || | | | ||||||||| || | || || |||||
Sbjct 13515 TTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGGAGT 13574
Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464
||| |||||||| | ||| || || |||||| | ||||||||||| ||||
Sbjct 13575 TCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 13624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468388020041200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |