Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 232 9e-56
seq973 109 7e-19
>seq4326
Length=27076
Score = 232 bits (256), Expect = 9e-56
Identities = 599/905 (66%), Gaps = 47/905 (5%)
Strand=Plus/Plus
Query 35869 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 35928
||| |||||||| || || || || ||||| || || || ||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 35929 CATGAAATCGAATGGATTG------------AT---------AAC-ATTATAA----Att 35962
||| || || || |||||| || ||| |||| || |||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 35963 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATG 36014
| ||| | | || | |||| | | || ||||||| |||||| || ||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 36015 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 36074
||||| || ||||||||||| || | | ||||| ||||| | | | ||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 36075 CTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGATATTACT-GTTTCTTCACTCGGTGG 36132
| ||||| || ||| ||||| ||| |||| || || || ||| ||| | |
Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279
Query 36133 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTAC 36191
| |||| ||||||||| | | ||| |||||||| || ||||| || ||||||||||
Sbjct 16280 TTG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337
Query 36192 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 36251
| |||||||| ||| ||| | ||||| ||||| || || || || |||||||| ||||
Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397
Query 36252 TGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 36311
| | || || ||||||||||||| ||||| ||||| ||||| ||||| | | |
Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457
Query 36312 CTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 36368
|| || || | || || | ||||| | | ||||| | ||||| ||| |
Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517
Query 36369 CACAAGGCA--TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 36426
|||||| | ||| || ||| || || |||||| ||| |||| || ||||| |
Sbjct 16518 CACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 36427 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 36486
||||||||||| || | | |||||||| || ||||| || || || || || || |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 36487 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 36546
|| || || || | | |||| | ||||| |||||| | || |||||| | ||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695
Query 36547 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 36606
|| || ||||||||||| || ||||| || || || || | ||| ||||
Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755
Query 36607 TTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 36666
||| | || | ||||| ||| |||||| || | |||||| ||||||||
Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815
Query 36667 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 36726
|||||||| || || | ||||| ||||| | || ||||| || || |||| || ||
Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875
Query 36727 AAAAA 36731
||||
Sbjct 16876 GAAAA 16880
>seq973
Length=64032
Score = 109 bits (120), Expect = 7e-19
Identities = 137/186 (74%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398
|| || ||||| || ||||||| || | ||| ||| ||| |||||||| || |||||
Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515
Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 66456
||||||||||| || |||| | | |||||||| || || | | |||| | ||
Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 13573
Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516
|||| || ||||| | || || ||||| || ||||||||||||||||| | || || |
Sbjct 13574 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 13633
Query 66517 ACGTCT 66522
||||||
Sbjct 13634 ACGTCT 13639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657980654678200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |