Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4612 105 7e-18 seq13659 100 3e-16 seq4326 86.0 6e-12 >seq4612 Length=25615 Score = 105 bits (116), Expect = 7e-18 Identities = 166/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 139532 ACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAA 139591 ||||| || || |||| |||| ||| | || | || |||||||| || ||||| ||| Sbjct 15961 ACATG-CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAA 15903 Query 139592 TCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 || || || | || | ||||| | ||| |||||||| | |||| |||||| || || Sbjct 15902 TCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTC 15844 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710 ||||| || ||||||||||| ||| || ||| | | || | || || | || Sbjct 15843 AGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGG 15784 Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| | || | |||||| || |||||||| || || || |||||||| Sbjct 15783 CTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| ||||| || || | || | ||||| | ||| ||||| Sbjct 15698 GTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 15640 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | |||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 15639 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 15580 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||| ||||| | || | |||||| || |||||||| Sbjct 15579 CACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGT 15520 Query 139747 TTTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 15519 CTTCACAAAGATTTGCAT 15502 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| || ||||| || || || || | || | ||||| | ||| ||||| Sbjct 15470 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 15412 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | |||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 15411 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 15352 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||| ||||| | || | |||||| || |||||||| Sbjct 15351 CACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGT 15292 Query 139747 TTTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 15291 CTTCACAAAGATTTGCAT 15274 >seq13659 Length=5019 Score = 100 bits (110), Expect = 3e-16 Identities = 165/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 139532 ACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAA 139591 ||||| || || |||| |||| ||| | || | || |||||||| || ||||| || Sbjct 866 ACATG-CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAG 924 Query 139592 TCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 || || || | || | ||||| | ||| |||||||| | |||| |||||| || || Sbjct 925 TCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTC 983 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710 ||||| || ||||||||||| ||| || ||| | | || | || || | || Sbjct 984 AGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGG 1043 Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| | || | |||||| || |||||||| || || || |||||||| Sbjct 1044 CTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| |||||||| || || || || | || | ||||| | ||| ||||| Sbjct 1129 GTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 1187 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | |||| |||||| || || ||||| || ||||||||||| ||| || ||| Sbjct 1188 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 1247 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||| ||||| | || | |||||| || ||||| || Sbjct 1248 CACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGT 1307 Query 139747 TTTTACGAATATTTGCAT 139764 ||||| || |||||||| Sbjct 1308 CTTTACAAAGATTTGCAT 1325 >seq4326 Length=27076 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 ||||||| | | |||||||| | ||||| | | | |||| | |||||||| |||||| Sbjct 16512 AAAAAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGT 16453 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATT- 52682 | | || ||||| |||||||||||| || ||||| ||||| || || || ||||| Sbjct 16452 TTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTCTTTTCTGGTAGCTTCGCAGCTATATTC 16393 Query 52683 TTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | | | | || | || | | ||||| || || | |||||||| || || || | Sbjct 16392 TGGCTTAAGAAACGAGGTC-TTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAG 16334 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGT 52773 ||||||||| | || ||||| || ||| Sbjct 16333 AGACGAAGGACTACATTGTGATTTCGCTTGT 16303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495919180316000