Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 105 7e-18
seq13659 100 3e-16
seq4326 86.0 6e-12
>seq4612
Length=25615
Score = 105 bits (116), Expect = 7e-18
Identities = 166/234 (71%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 139532 ACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAA 139591
||||| || || |||| |||| ||| | || | || |||||||| || ||||| |||
Sbjct 15961 ACATG-CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAA 15903
Query 139592 TCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650
|| || || | || | ||||| | ||| |||||||| | |||| |||||| || ||
Sbjct 15902 TCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTC 15844
Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710
||||| || ||||||||||| ||| || ||| | | || | || || | ||
Sbjct 15843 AGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGG 15784
Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| ||||| | || | |||||| || |||||||| || || || ||||||||
Sbjct 15783 CTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| |||||||| || ||||| ||||| || || | || | ||||| | ||| |||||
Sbjct 15698 GTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 15640
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| | |||| |||||| || || ||||| || ||||||||||| ||| || |||
Sbjct 15639 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 15580
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | || || | ||||| ||||| | || | |||||| || ||||||||
Sbjct 15579 CACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGT 15520
Query 139747 TTTTACGAATATTTGCAT 139764
|| || || ||||||||
Sbjct 15519 CTTCACAAAGATTTGCAT 15502
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| |||||||| || ||||| || || || || | || | ||||| | ||| |||||
Sbjct 15470 GTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 15412
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| | |||| |||||| || || ||||| || ||||||||||| ||| || |||
Sbjct 15411 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 15352
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | || || | ||||| ||||| | || | |||||| || ||||||||
Sbjct 15351 CACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGT 15292
Query 139747 TTTTACGAATATTTGCAT 139764
|| || || ||||||||
Sbjct 15291 CTTCACAAAGATTTGCAT 15274
>seq13659
Length=5019
Score = 100 bits (110), Expect = 3e-16
Identities = 165/234 (71%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 139532 ACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAA 139591
||||| || || |||| |||| ||| | || | || |||||||| || ||||| ||
Sbjct 866 ACATG-CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAG 924
Query 139592 TCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650
|| || || | || | ||||| | ||| |||||||| | |||| |||||| || ||
Sbjct 925 TCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTC 983
Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGG 139710
||||| || ||||||||||| ||| || ||| | | || | || || | ||
Sbjct 984 AGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGG 1043
Query 139711 CTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| ||||| | || | |||||| || |||||||| || || || ||||||||
Sbjct 1044 CTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097
Score = 98.7 bits (108), Expect = 1e-15
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| |||||||| |||||||| || || || || | || | ||||| | ||| |||||
Sbjct 1129 GTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACC 1187
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| | |||| |||||| || || ||||| || ||||||||||| ||| || |||
Sbjct 1188 AGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTT 1247
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | || || | ||||| ||||| | || | |||||| || ||||| ||
Sbjct 1248 CACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGT 1307
Query 139747 TTTTACGAATATTTGCAT 139764
||||| || ||||||||
Sbjct 1308 CTTTACAAAGATTTGCAT 1325
>seq4326
Length=27076
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623
||||||| | | |||||||| | ||||| | | | |||| | |||||||| ||||||
Sbjct 16512 AAAAAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGT 16453
Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATT- 52682
| | || ||||| |||||||||||| || ||||| ||||| || || || |||||
Sbjct 16452 TTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTCTTTTCTGGTAGCTTCGCAGCTATATTC 16393
Query 52683 TTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742
| | | | || | || | | ||||| || || | |||||||| || || || |
Sbjct 16392 TGGCTTAAGAAACGAGGTC-TTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAG 16334
Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGT 52773
||||||||| | || ||||| || |||
Sbjct 16333 AGACGAAGGACTACATTGTGATTTCGCTTGT 16303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495919180316000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |