Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4326 235 8e-57 seq973 109 8e-19 >seq4326 Length=27076 Score = 235 bits (260), Expect = 8e-57 Identities = 609/926 (66%), Gaps = 43/926 (5%) Strand=Plus/Plus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 ||| |||||||| || || || || ||||| || || |||||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 49731 CATGAAATCAAACGGATTG---------------------GTAAC-ATTATAA----Att 49764 ||| || ||||| |||||| | ||| |||| || ||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 49765 t--------ttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATG 49816 | ||| | | || | |||| | | || || |||| |||||| || || Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 49817 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 49876 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 49877 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACG-GTTTCTTCACTCGGTGGA 49935 | ||||| || ||||| ||| |||| || || ||| ||| ||| | | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280 Query 49936 TGCAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACT 49994 || |||| ||||||||| | | ||| |||||||| || || || || ||||||||||| Sbjct 16281 TG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338 Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054 |||| ||| ||| ||| | ||||| ||||| || || || || |||||||| ||||| Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398 Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 | || || ||||||||||| | ||||| ||||| ||||| |||| | | || Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458 Query 50115 TCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 50171 | || || | | || || | ||||| | | ||||| | ||||| ||| || Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518 Query 50172 ACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 50230 ||||| | ||| | |||||| || |||||| ||| |||| || ||||| | | Sbjct 16519 ACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 16577 Query 50231 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 50290 | ||||| || || | | |||||||| || ||||| || || || || ||||| | | Sbjct 16578 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 16637 Query 50291 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTT 50350 | || || || | | |||| | ||||| |||||| | || ||||| | || | Sbjct 16638 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTCT 16697 Query 50351 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTT 50410 | || ||||||||||| || ||||| || || || || | ||| ||||| || Sbjct 16698 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 16757 Query 50411 CGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 50470 | | || | ||||| ||| |||||| || | ||| || |||||||| | Sbjct 16758 CCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAG 16817 Query 50471 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 50530 ||||||| || || | ||||| ||||| | || ||||| || || |||| || |||| Sbjct 16818 TCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGA 16877 Query 50531 AAATAACAAATCTATTTGGATTTGGT 50556 ||| || || | | ||| |||||| Sbjct 16878 AAAGGACGAAACGGTGTGGGTTTGGT 16903 >seq973 Length=64032 Score = 109 bits (120), Expect = 8e-19 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || ||||| Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 80335 ||||| ||||| || |||| | | |||||||| || || | | |||| | || Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 13573 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 80395 |||| || ||||| | || || ||||| || ||||||||||||||||||| || || | Sbjct 13574 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 13633 Query 80396 ACGTCT 80401 |||||| Sbjct 13634 ACGTCT 13639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718059110402200