Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 214 2e-50
>seq4326
Length=27076
Score = 214 bits (236), Expect = 2e-50
Identities = 453/673 (67%), Gaps = 46/673 (7%)
Strand=Plus/Plus
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||||||||| ||||| || ||||| ||||| || || ||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 13643 CATAAAATCAAATGGATTT----ATTGACA----TAAAC--------------------- 13673
|||||| ||||| ||||| | ||| | |||||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 13674 -----ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATT 13728
|| || ||| |||| ||||| | ||||| || || || ||||| ||||| || |
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 13729 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATT 13788
|| |||| | | |||||||| || |||| | || || | | | |||||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 13789 CTTTTTCTAT-AGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGA 13847
| | |||||| ||| || |||||| |||| || || | || || |||||
Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279
Query 13848 TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 13907
| | | ||||||||| | || ||| || ||||||||||| || || || ||||||||
Sbjct 16280 TTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTG 16339
Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967
|| | ||| || ||| | | ||| ||||| | |||||||| || | ||| |||||
Sbjct 16340 ATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATA 16399
Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027
|| || || || |||||||| | || || ||||| ||||| || ||||| ||||||
Sbjct 16400 GCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCT 16459
Query 14028 CCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14086
|||| | | ||| | || | ||||| | | ||||| | || |||||| ||
Sbjct 16460 GCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518
Query 14087 AAAA--TCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAA 14142
| || | ||| || || || || || | | | ||| | ||||| ||| ||| |
Sbjct 16519 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG--A 16574
Query 14143 TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAA 14202
||||||||||||| | ||| |||||||||||||| || || || ||||||||||| |
Sbjct 16575 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 16634
Query 14203 AACCATAAAAGCA 14215
|||||||||||
Sbjct 16635 TCCCATAAAAGCA 16647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479587949407000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |