Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4326 214 2e-50 >seq4326 Length=27076 Score = 214 bits (236), Expect = 2e-50 Identities = 453/673 (67%), Gaps = 46/673 (7%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||||| ||||| || ||||| ||||| || || ||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 13643 CATAAAATCAAATGGATTT----ATTGACA----TAAAC--------------------- 13673 |||||| ||||| ||||| | ||| | ||||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 13674 -----ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATT 13728 || || ||| |||| ||||| | ||||| || || || ||||| ||||| || | Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 13729 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATT 13788 || |||| | | |||||||| || |||| | || || | | | |||||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 13789 CTTTTTCTAT-AGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGA 13847 | | |||||| ||| || |||||| |||| || || | || || ||||| Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279 Query 13848 TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 13907 | | | ||||||||| | || ||| || ||||||||||| || || || |||||||| Sbjct 16280 TTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTG 16339 Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 16340 ATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATA 16399 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 || || || || |||||||| | || || ||||| ||||| || ||||| |||||| Sbjct 16400 GCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCT 16459 Query 14028 CCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14086 |||| | | ||| | || | ||||| | | ||||| | || |||||| || Sbjct 16460 GCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518 Query 14087 AAAA--TCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAA 14142 | || | ||| || || || || || | | | ||| | ||||| ||| ||| | Sbjct 16519 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG--A 16574 Query 14143 TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAA 14202 ||||||||||||| | ||| |||||||||||||| || || || ||||||||||| | Sbjct 16575 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 16634 Query 14203 AACCATAAAAGCA 14215 ||||||||||| Sbjct 16635 TCCCATAAAAGCA 16647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479587949407000