Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4326 219 4e-52 >seq4326 Length=27076 Score = 219 bits (242), Expect = 4e-52 Identities = 574/872 (66%), Gaps = 48/872 (6%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||||||||| ||||| || ||||||||||| || || ||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 13431 CATAAAATCGAATGGATTTGT-----TGACA----TAAAC-------------------- 13461 |||||| || || ||||| || ||| | ||||| Sbjct 16041 CATAAAGTCAAAAGGATT-GTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAAT 16099 Query 13462 ------ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATAT 13515 || || ||| |||| ||||| | || || || || || ||||| ||||| || Sbjct 16100 TTACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTAC 16159 Query 13516 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAAT 13575 ||| |||| | | |||||||| || |||| | || || | | | |||||| Sbjct 16160 TGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAAC 16219 Query 13576 TCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGG 13634 || | |||||| ||| || ||||| |||| || || || | || || ||||| Sbjct 16220 TCCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTT 16278 Query 13635 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13694 | | | ||||||||| | || ||| || ||||||||||| || || || |||||||| Sbjct 16279 TTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338 Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398 Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814 || ||||| || |||||||| | || || ||||| ||||| || |||| ||||| Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458 Query 13815 TCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874 | |||| | | ||| | | ||||| | | ||||| | || |||||| || Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518 Query 13875 AAAA--TCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT--AGTACTTGAA 13929 | || | ||| || || || ||||| | || || |||| ||||| ||| ||| Sbjct 16519 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG-- 16573 Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 |||||||||||||| | ||| |||||||||||||| || || || ||||||||||| Sbjct 16574 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 16633 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 | |||||||| || | | | |||| || || || | || | |||| | | Sbjct 16634 ATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGG 16693 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 || || ||||| || ||||| || ||||| || || || | || || || | Sbjct 16694 TTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGA 16753 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169 | || || ||||| | ||||| | ||| || || | ||| || || || Sbjct 16754 CGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCC 16813 Query 14170 ACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 || ||||||||| ||| ||||| || ||||| Sbjct 16814 ACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478449081982200