Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 219 4e-52
>seq4326
Length=27076
Score = 219 bits (242), Expect = 4e-52
Identities = 574/872 (66%), Gaps = 48/872 (6%)
Strand=Plus/Plus
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||||||||| ||||| || ||||||||||| || || ||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 13431 CATAAAATCGAATGGATTTGT-----TGACA----TAAAC-------------------- 13461
|||||| || || ||||| || ||| | |||||
Sbjct 16041 CATAAAGTCAAAAGGATT-GTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAAT 16099
Query 13462 ------ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATAT 13515
|| || ||| |||| ||||| | || || || || || ||||| ||||| ||
Sbjct 16100 TTACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTAC 16159
Query 13516 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAAT 13575
||| |||| | | |||||||| || |||| | || || | | | ||||||
Sbjct 16160 TGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAAC 16219
Query 13576 TCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGG 13634
|| | |||||| ||| || ||||| |||| || || || | || || |||||
Sbjct 16220 TCCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTT 16278
Query 13635 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13694
| | | ||||||||| | || ||| || ||||||||||| || || || ||||||||
Sbjct 16279 TTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338
Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754
|| | ||| || ||| | | ||| ||||| | |||||||| || | ||| |||||
Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398
Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814
|| ||||| || |||||||| | || || ||||| ||||| || |||| |||||
Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458
Query 13815 TCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874
| |||| | | ||| | | ||||| | | ||||| | || |||||| ||
Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518
Query 13875 AAAA--TCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT--AGTACTTGAA 13929
| || | ||| || || || ||||| | || || |||| ||||| ||| |||
Sbjct 16519 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG-- 16573
Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989
|||||||||||||| | ||| |||||||||||||| || || || |||||||||||
Sbjct 16574 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 16633
Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049
| |||||||| || | | | |||| || || || | || | |||| | |
Sbjct 16634 ATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGG 16693
Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109
|| || ||||| || ||||| || ||||| || || || | || || || |
Sbjct 16694 TTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGA 16753
Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169
| || || ||||| | ||||| | ||| || || | ||| || || ||
Sbjct 16754 CGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCC 16813
Query 14170 ACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201
|| ||||||||| ||| ||||| || |||||
Sbjct 16814 ACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478449081982200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |