Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 246 4e-60
seq973 114 2e-20
>seq4326
Length=27076
Score = 246 bits (272), Expect = 4e-60
Identities = 616/928 (66%), Gaps = 47/928 (5%)
Strand=Plus/Plus
Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835
||| |||||||| || || || || ||||| || ||||||||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 41836 CATGAAATCAAACGGATTG---------------------GTAAC-ATTATAA----Att 41869
||| || ||||| |||||| | ||| |||| || |||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 41870 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATG 41921
| ||| | | || | |||| | | || |||||||| ||||| || ||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 41922 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 41981
||||| || ||||||||||| || | | ||||| ||||| | | | ||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 41982 CTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGATCTTACT-GTTTCTTCACTCGGTGG 42039
| ||||| || ||| ||||| ||| |||| || || || ||| ||| | |
Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279
Query 42040 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTAC 42098
| |||| ||||||||| | | ||| |||||||| || || || || || |||||||
Sbjct 16280 TTG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337
Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158
| |||||||| ||| ||| | ||||| ||||| || || || || |||||||| ||||
Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397
Query 42159 TAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 42218
||| || || ||||||||||| | ||||| ||||| ||||| ||||| | | |
Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457
Query 42219 CTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 42275
|| || || | || || | ||||| | | ||||| | ||||| ||| |
Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517
Query 42276 CACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 42334
|||||| | ||| | |||||| || |||||| ||| |||| || ||||| |
Sbjct 16518 CACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 16576
Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394
|||||||| || || | | |||||||| || ||||| || || || || ||||| |
Sbjct 16577 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATC 16636
Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454
|| || || || | |||| | | ||| |||||| | || ||||| | ||
Sbjct 16637 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTC 16696
Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514
||| || ||||||||||| || ||||| || || || || | ||| |||| |
Sbjct 16697 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGT 16756
Query 42515 TCGTCCGGTGTTAATTTA-TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTAC 42573
|| || || | | | ||||| ||| |||||| || | ||| || ||||| ||
Sbjct 16757 TC-CCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815
Query 42574 CGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633
|||||||| || ||| | ||||| ||||| | || ||||| ||| || |||| || ||
Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875
Query 42634 GAAAATAACAAATCTATTTGGATTTGGT 42661
||||| || || | | ||| ||||||
Sbjct 16876 GAAAAGGACGAAACGGTGTGGGTTTGGT 16903
>seq973
Length=64032
Score = 114 bits (126), Expect = 2e-20
Identities = 138/186 (74%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360
|| || ||||| || ||||||| || | ||| ||| ||| |||||||| || |||||
Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515
Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 72418
||||||||||| || |||| | | |||||||| || || | | |||| | ||
Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 13573
Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478
|||| || ||||| | || || ||||| || ||||||||||||||||||| || || |
Sbjct 13574 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 13633
Query 72479 ACGTCT 72484
||||||
Sbjct 13634 ACGTCT 13639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670943269299800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |