Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4326 246 4e-60 seq973 114 2e-20 >seq4326 Length=27076 Score = 246 bits (272), Expect = 4e-60 Identities = 616/928 (66%), Gaps = 47/928 (5%) Strand=Plus/Plus Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| |||||||| || || || || ||||| || ||||||||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 41836 CATGAAATCAAACGGATTG---------------------GTAAC-ATTATAA----Att 41869 ||| || ||||| |||||| | ||| |||| || ||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 41870 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATG 41921 | ||| | | || | |||| | | || |||||||| ||||| || || Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 41922 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 41981 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 41982 CTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGATCTTACT-GTTTCTTCACTCGGTGG 42039 | ||||| || ||| ||||| ||| |||| || || || ||| ||| | | Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279 Query 42040 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTAC 42098 | |||| ||||||||| | | ||| |||||||| || || || || || ||||||| Sbjct 16280 TTG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 | |||||||| ||| ||| | ||||| ||||| || || || || |||||||| |||| Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397 Query 42159 TAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 42218 ||| || || ||||||||||| | ||||| ||||| ||||| ||||| | | | Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457 Query 42219 CTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 42275 || || || | || || | ||||| | | ||||| | ||||| ||| | Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517 Query 42276 CACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 42334 |||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 16518 CACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 16576 Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 |||||||| || || | | |||||||| || ||||| || || || || ||||| | Sbjct 16577 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATC 16636 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || || || || | |||| | | ||| |||||| | || ||||| | || Sbjct 16637 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTC 16696 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 ||| || ||||||||||| || ||||| || || || || | ||| |||| | Sbjct 16697 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGT 16756 Query 42515 TCGTCCGGTGTTAATTTA-TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTAC 42573 || || || | | | ||||| ||| |||||| || | ||| || ||||| || Sbjct 16757 TC-CCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815 Query 42574 CGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633 |||||||| || ||| | ||||| ||||| | || ||||| ||| || |||| || || Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875 Query 42634 GAAAATAACAAATCTATTTGGATTTGGT 42661 ||||| || || | | ||| |||||| Sbjct 16876 GAAAAGGACGAAACGGTGTGGGTTTGGT 16903 >seq973 Length=64032 Score = 114 bits (126), Expect = 2e-20 Identities = 138/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || ||||| Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 72418 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 13573 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| || ||||| | || || ||||| || ||||||||||||||||||| || || | Sbjct 13574 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 13633 Query 72479 ACGTCT 72484 |||||| Sbjct 13634 ACGTCT 13639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670943269299800