Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq973 102 1e-16 seq4630 84.2 3e-11 >seq973 Length=64032 Score = 102 bits (112), Expect = 1e-16 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 96851 CAAT-GCAATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCG 96909 |||| ||| || ||||||| ||| || || || || || || ||||| || | ||| Sbjct 13264 CAATAGCACTG-CACGATATGTTGACCAAGGAGGTAACAAGCGTCCAGGAGCCTTTGCCA 13206 Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 | ||||| |||||||||||| | || || ||| | || || || ||||| ||||| ||| Sbjct 13205 TGTACTTAGAACCTTGGCACCCTGATGTATTTCAGTTCATAGAAATGCGGAAAAATACTG 13146 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || |||||| || || |||||||||| | ||| |||||| | || || ||||| | Sbjct 13145 GCGCCGAAGAGATTCGTGCACGGGACTTGTTCTTTGCCCTCTGGATACCTGACTTGTTTA 13086 Query 97030 TGAAGCGCGT 97039 || ||||| Sbjct 13085 TGCGCCGCGT 13076 >seq4630 Length=25536 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||| || |||||||| || || |||||||| ||| || | || || | ||||||||||| Sbjct 12831 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCA 12772 Query 70399 CATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTT 70458 ||||| || | ||| | |||||||| ||||| |||||||| || || | |||| Sbjct 12771 TATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTATTC 12712 Query 70459 AAATCA 70464 ||| || Sbjct 12711 AAACCA 12706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740842857029800