Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 122 6e-23
seq13659 120 2e-22
seq6368 102 6e-17
>seq4612
Length=25615
Score = 122 bits (134), Expect = 6e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | ||| | ||| || ||||| || ||||||||||| ||| | | | |||||
Sbjct 15939 AACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTC 15880
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|| || || |||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 15879 CAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG 15820
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
|| || ||| || ||| | || || ||||| ||| || || ||||| || || || |
Sbjct 15819 GATCTTCGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCT 15761
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||| |||| || || ||||| ||||||||
Sbjct 15760 TACCAGTCAACGTCTTCACAAAGATTTGCAT 15730
Score = 120 bits (132), Expect = 2e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| || || || ||||| || ||||||||||| ||| | | | ||||| || ||
Sbjct 15705 ATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTG 15646
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278
|| |||||| ||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 15645 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15586
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
||| || ||| | || || ||||| ||| || || ||||| || || || ||||| |
Sbjct 15585 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAG 15527
Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363
||| || || ||||| ||||||||
Sbjct 15526 TCAACGTCTTCACAAAGATTTGCAT 15502
Score = 114 bits (126), Expect = 9e-21
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| || || || ||||| || |||||||| || ||| | | | ||||| || ||
Sbjct 15477 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 15418
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278
|| |||||| ||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 15417 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15358
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
||| || ||| | || || ||||| ||| || || ||||| || || || ||||| |
Sbjct 15357 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAG 15299
Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363
||| || || ||||| ||||||||
Sbjct 15298 TCAACGTCTTCACAAAGATTTGCAT 15274
>seq13659
Length=5019
Score = 120 bits (132), Expect = 2e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| || || || ||||| || |||||||| || ||| | | | ||||| || ||
Sbjct 1122 ATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 1181
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278
|| |||||| ||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 1182 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 1241
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
||| || ||| | || || ||||| ||| || || || || ||||| || || ||||
Sbjct 1242 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTG 1300
Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363
||| || |||||||| ||||||||
Sbjct 1301 TCAATGTCTTTACAAAGATTTGCAT 1325
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | ||| | ||| || ||||| || |||||||| || ||| | | | |||||
Sbjct 888 AACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTC 947
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|| || || |||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 948 CAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG 1007
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
|| || ||| || ||| | || || ||||| ||| || || ||||| || || || |
Sbjct 1008 GATCTTCGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCT 1066
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||| |||| || || ||||| ||||||||
Sbjct 1067 TACCAGTCAACGTCTTCACAAAGATTTGCAT 1097
>seq6368
Length=18664
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||| || || || || ||||| || || ||| ||| ||| | ||||| | |||
Sbjct 833 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 774
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||||||||| | || | |||||||||||| ||| || |||||||| || ||||||
Sbjct 773 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 714
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || |||||| ||||| | || || |||| ||| || ||||| || ||
Sbjct 713 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGT 654
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || ||||| |||||
Sbjct 653 AAGTGTCTTCACGAAAATCTGCAT 630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362076109652055
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |