Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4612 122 6e-23 seq13659 120 2e-22 seq6368 102 6e-17 >seq4612 Length=25615 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| | ||| || ||||| || ||||||||||| ||| | | | ||||| Sbjct 15939 AACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTC 15880 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || |||||| ||||||||||||||||||| ||||| ||||||||||| Sbjct 15879 CAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG 15820 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| | || || ||||| ||| || || ||||| || || || | Sbjct 15819 GATCTTCGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCT 15761 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| |||| || || ||||| |||||||| Sbjct 15760 TACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || ||||||||||| ||| | | | ||||| || || Sbjct 15705 ATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTG 15646 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| ||||||||||||||||||| ||||| ||||||||||| || || Sbjct 15645 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15586 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || ||||| || || || ||||| | Sbjct 15585 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAG 15527 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| |||||||| Sbjct 15526 TCAACGTCTTCACAAAGATTTGCAT 15502 Score = 114 bits (126), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 15477 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 15418 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| ||||||||||||||||||| ||||| ||||||||||| || || Sbjct 15417 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15358 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || ||||| || || || ||||| | Sbjct 15357 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAG 15299 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| |||||||| Sbjct 15298 TCAACGTCTTCACAAAGATTTGCAT 15274 >seq13659 Length=5019 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 1122 ATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 1181 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| ||||||||||||||||||| ||||| ||||||||||| || || Sbjct 1182 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 1241 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||| | || || ||||| ||| || || || || ||||| || || |||| Sbjct 1242 CGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTG 1300 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || |||||||| |||||||| Sbjct 1301 TCAATGTCTTTACAAAGATTTGCAT 1325 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| | ||| || ||||| || |||||||| || ||| | | | ||||| Sbjct 888 AACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTC 947 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || |||||| ||||||||||||||||||| ||||| ||||||||||| Sbjct 948 CAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG 1007 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| | || || ||||| ||| || || ||||| || || || | Sbjct 1008 GATCTTCGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCT 1066 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| |||| || || ||||| |||||||| Sbjct 1067 TACCAGTCAACGTCTTCACAAAGATTTGCAT 1097 >seq6368 Length=18664 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || ||||| || || ||| ||| ||| | ||||| | ||| Sbjct 833 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 774 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | || | |||||||||||| ||| || |||||||| || |||||| Sbjct 773 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 714 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || |||||| ||||| | || || |||| ||| || ||||| || || Sbjct 713 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGT 654 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| Sbjct 653 AAGTGTCTTCACGAAAATCTGCAT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362076109652055