Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq13659 102 5e-17 seq6368 100 2e-16 seq4612 93.3 3e-14 >seq13659 Length=5019 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 1122 ATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 1181 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| ||||| |||||||| ||||| | || || |||||||| || ||| Sbjct 1182 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 1241 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | ||| |||| || ||||| ||||| || Sbjct 1242 CGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGT 1301 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || ||||| || |||||||| Sbjct 1302 CAATGTCTTTACAAAGATTTGCAT 1325 >seq6368 Length=18664 Score = 100 bits (110), Expect = 2e-16 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| || || || |||||||| || || || | | | || || |||| ||| Sbjct 833 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 774 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAAT--- 33282 || ||| ||| |||| |||||| ||||| | || ||||||||||| || ||| Sbjct 773 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 714 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 ||||| | |||| || || || || || | ||| || || ||||| |||||||| Sbjct 713 CGCCT---TAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCC 657 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || || |||||||| ||||| Sbjct 656 CGTAAGTGTCTTCACGAAAATCTGCAT 630 >seq4612 Length=25615 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||||||||||| | | || || ||||| || Sbjct 15705 ATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTG 15646 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| ||||| |||||||| ||||| | || || |||||||| || ||| Sbjct 15645 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15586 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | ||| || | || ||||| || || || Sbjct 15585 CGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGT 15526 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || |||||||| Sbjct 15525 CAACGTCTTCACAAAGATTTGCAT 15502 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || | ||| || || |||||||| || || ||||||||||||| | | || Sbjct 15944 CGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCA 15885 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| ||| ||||| |||||||| ||||| | || || |||||||| Sbjct 15884 TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 15825 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| | ||| || | | ||| || || | || | ||| || | || ||| Sbjct 15824 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATC 15765 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || | || || || || |||||||| Sbjct 15764 GTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||||||||||| || || ||||| ||||||| | | || || ||||| || Sbjct 15477 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 15418 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||| ||| ||||| |||||||| ||||| | || || |||||||| || ||| Sbjct 15417 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15358 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 | ||| || | | ||| || || | || | ||| || | || ||||| || || || Sbjct 15357 CGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGT 15298 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || |||||||| Sbjct 15297 CAACGTCTTCACAAAGATTTGCAT 15274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318686863442790