Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq13659 98.7 7e-16 seq4612 98.7 7e-16 >seq13659 Length=5019 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || |||||||| ||||| ||||| |||| | |||||||| Sbjct 941 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 1000 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| ||||| || || | ||| | Sbjct 1001 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGA 1060 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || ||||||||||| |||||||| Sbjct 1061 TCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097 >seq4612 Length=25615 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || |||||||| ||||| ||||| |||| | |||||||| Sbjct 15430 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 15371 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| ||||| || || | ||| | Sbjct 15370 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGA 15311 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || ||||||||||| |||||||| Sbjct 15310 TCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15274 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || |||||||| ||||| ||||| |||| | |||||||| Sbjct 15658 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 15599 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| ||||| || || | ||| | Sbjct 15598 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGA 15539 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || ||||||||||| |||||||| Sbjct 15538 TCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15502 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || |||||||| ||||| ||||| |||| | |||||||| Sbjct 15886 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 15827 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || || ||| || | ||| |||||| ||||| || || | ||| | Sbjct 15826 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGA 15767 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| || || ||||||||||| |||||||| Sbjct 15766 TCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354676616436540