Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 98.7 7e-16
seq4612 98.7 7e-16
>seq13659
Length=5019
Score = 98.7 bits (108), Expect = 7e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||| || || || || |||||||| ||||| ||||| |||| | ||||||||
Sbjct 941 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 1000
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| || || ||| || | ||| |||||| ||||| || || | ||| |
Sbjct 1001 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGA 1060
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || ||||| || || ||||||||||| ||||||||
Sbjct 1061 TCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097
>seq4612
Length=25615
Score = 98.7 bits (108), Expect = 7e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||| || || || || |||||||| ||||| ||||| |||| | ||||||||
Sbjct 15430 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 15371
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| || || ||| || | ||| |||||| ||||| || || | ||| |
Sbjct 15370 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGA 15311
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || ||||| || || ||||||||||| ||||||||
Sbjct 15310 TCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15274
Score = 98.7 bits (108), Expect = 7e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||| || || || || |||||||| ||||| ||||| |||| | ||||||||
Sbjct 15658 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 15599
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| || || ||| || | ||| |||||| ||||| || || | ||| |
Sbjct 15598 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGA 15539
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || ||||| || || ||||||||||| ||||||||
Sbjct 15538 TCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15502
Score = 98.7 bits (108), Expect = 7e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| ||||| || || || || |||||||| ||||| ||||| |||| | ||||||||
Sbjct 15886 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 15827
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| || || ||| || | ||| |||||| ||||| || || | ||| |
Sbjct 15826 TGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGA 15767
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || ||||| || || ||||||||||| ||||||||
Sbjct 15766 TCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354676616436540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |