Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4326 253 2e-62 >seq4326 Length=27076 Score = 253 bits (280), Expect = 2e-62 Identities = 583/873 (67%), Gaps = 50/873 (6%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| | ||||| || |||||||||||||| |||||||| | || |||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGT-------------------------ATT 12956 |||||| || |||||||| | ||| ||| ||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 12957 T---------TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACT 13007 | || | | || | ||| | || | ||||| || | ||| || ||||||| Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 13008 GTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt 13067 | ||| | | || |||||||| ||||| | || || | |||||||| |||||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 13068 ttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGA- 13126 | |||||| ||| || || | | ||| | || | |||||| || |||| | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTAT-TGACTCAACACGTTC-CT--TGGAAGGC 16276 Query 13127 --TTTGATAG-ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTA 13183 ||||||| ||| ||||| | | ||| || |||||||| || | |||||| |||||| Sbjct 16277 TTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 16336 Query 13184 CTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAAT 13243 || |||| || || ||| | || || |||||||| |||||||| |||| ||| ||| Sbjct 16337 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 16396 Query 13244 ATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTT 13303 ||||| || || ||| ||||| || | ||||| ||||||||||| || || || | | Sbjct 16397 ATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 16456 Query 13304 TCACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTT 13362 || || | ||| |||| | ||| | ||||| | | ||||| | || |||| | Sbjct 16457 TCTGCAAAAGTA-GATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 16515 Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422 ||| || | | || ||| ||||| || | | | | |||| || |||| || Sbjct 16516 AACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575 Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482 || ||||| || ||||| |||||||| || |||||||| || || ||||| || | Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635 Query 13483 ACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTT 13542 |||||||| || | | |||||| | ||| ||||| | || | |||| | ||| Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695 Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGT-GCTTAATAAAttttt 13601 ||| || || |||||||| || ||||| ||||| | | || | || |||| Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755 Query 13602 tttCGTTTTC-TGA-CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659 || | | ||| | ||| ||||| | | |||||| || ||||| ||||| || Sbjct 16756 TTCCCCAACCTTGAGCGACT---CCCAATGTATGAGATCTTTGGACAAATCCACCTCTTC 16812 Query 13660 AACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || |||||||||||||| |||||||||||||| Sbjct 16813 CACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430859725573710