Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 253 2e-62
>seq4326
Length=27076
Score = 253 bits (280), Expect = 2e-62
Identities = 583/873 (67%), Gaps = 50/873 (6%)
Strand=Plus/Plus
Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921
||||||||| | ||||| || |||||||||||||| |||||||| | || ||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGT-------------------------ATT 12956
|||||| || |||||||| | ||| ||| |||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 12957 T---------TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACT 13007
| || | | || | ||| | || | ||||| || | ||| || |||||||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 13008 GTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt 13067
| ||| | | || |||||||| ||||| | || || | |||||||| |||||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 13068 ttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGA- 13126
| |||||| ||| || || | | ||| | || | |||||| || |||| |
Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTAT-TGACTCAACACGTTC-CT--TGGAAGGC 16276
Query 13127 --TTTGATAG-ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTA 13183
||||||| ||| ||||| | | ||| || |||||||| || | |||||| ||||||
Sbjct 16277 TTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 16336
Query 13184 CTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAAT 13243
|| |||| || || ||| | || || |||||||| |||||||| |||| ||| |||
Sbjct 16337 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 16396
Query 13244 ATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTT 13303
||||| || || ||| ||||| || | ||||| ||||||||||| || || || | |
Sbjct 16397 ATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 16456
Query 13304 TCACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTT 13362
|| || | ||| |||| | ||| | ||||| | | ||||| | || |||| |
Sbjct 16457 TCTGCAAAAGTA-GATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 16515
Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422
||| || | | || ||| ||||| || | | | | |||| || |||| ||
Sbjct 16516 AACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482
|| ||||| || ||||| |||||||| || |||||||| || || ||||| || |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 13483 ACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTT 13542
|||||||| || | | |||||| | ||| ||||| | || | |||| | |||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695
Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGT-GCTTAATAAAttttt 13601
||| || || |||||||| || ||||| ||||| | | || | || ||||
Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755
Query 13602 tttCGTTTTC-TGA-CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659
|| | | ||| | ||| ||||| | | |||||| || ||||| ||||| ||
Sbjct 16756 TTCCCCAACCTTGAGCGACT---CCCAATGTATGAGATCTTTGGACAAATCCACCTCTTC 16812
Query 13660 AACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692
|| |||||||||||||| ||||||||||||||
Sbjct 16813 CACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430859725573710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |