Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6368 170 4e-37
seq13659 158 3e-33
seq4612 156 1e-32
>seq6368
Length=18664
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | ||| ||||| ||||| ||||||||||| || ||||||| || |||
Sbjct 841 AGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCT 782
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| |||||||| |||||||||||||| | ||||| || || || || |||||||||||
Sbjct 781 TCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCT 722
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || || || || ||||| ||||| ||| || || ||||| || |||||
Sbjct 721 TGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTT 662
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || |||||||| || || || ||||||||
Sbjct 661 TTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630
>seq13659
Length=5019
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | ||| | ||| || ||||| | || || ||||||||||| || ||||||
Sbjct 1096 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCA 1155
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| | || || ||||| || || | | ||||| ||||||
Sbjct 1156 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 1215
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || || ||||| ||||| ||||| || | ||||| ||||| ||
Sbjct 1216 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 1275
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | ||||| ||||| || || | ||| |||||||| || |||||
Sbjct 1276 ACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | || || |||||||| || || |||||||| || || ||||||
Sbjct 868 ATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCA 927
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| | || || ||||| || || | | ||||| ||||||
Sbjct 928 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 987
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || || ||||| ||||| ||||| || | ||||| ||||| ||
Sbjct 988 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 1047
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||||| || || ||||||||||| | || || ||||| || ||||||
Sbjct 1048 ACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098
>seq4612
Length=25615
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | ||| | ||| || ||||| | || || |||||||| || || ||||||
Sbjct 15503 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 15444
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| | || || ||||| || || | | ||||| ||||||
Sbjct 15443 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 15384
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || || ||||| ||||| ||||| || | ||||| ||||| ||
Sbjct 15383 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 15324
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||||| || || ||||||||||| | || || ||||| || ||||||
Sbjct 15323 ACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15273
Score = 150 bits (166), Expect = 4e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | ||| | ||| || ||||| | || || |||||||| || || || |||
Sbjct 15731 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCA 15672
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| | || || ||||| || || | | ||||| ||||||
Sbjct 15671 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 15612
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || || ||||| ||||| ||||| || | ||||| ||||| ||
Sbjct 15611 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 15552
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||||| || || ||||||||||| | || || ||||| || ||||||
Sbjct 15551 ACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501
Score = 150 bits (166), Expect = 4e-31
Identities = 172/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | || || |||||||| || || |||||||| || || || |||
Sbjct 15959 ATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCA 15900
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| | || || ||||| || || | | ||||| ||||||
Sbjct 15899 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 15840
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || || ||||| ||||| ||||| || | ||||| ||||| ||
Sbjct 15839 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 15780
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||||| || || ||||||||||| | || || ||||| || ||||||
Sbjct 15779 ACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151053860220340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |