Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5260 172 9e-39 seq4355 170 3e-38 seq3163 156 7e-34 >seq5260 Length=22575 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| || || || || Sbjct 5550 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACAAAACCTGCAAT 5492 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||||||| || || || | || |||||| |||| || |||| Sbjct 5491 CCGTCGTCTGGCTCGTCGTGGTGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 5432 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| ||||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 5431 TCGTGGTGTTCTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 5372 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 5371 GCACGCCAAGAGGAAGACAGTGACAGCTATGGACGTGGTGTACGCTTTGAAACGCCAAGG 5312 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 5311 TCGTACTTTGTACGGTTTCGGTGGTTAAT 5283 >seq4355 Length=26960 Score = 170 bits (188), Expect = 3e-38 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||| || || || |||||||||||||||||||||||||| Sbjct 25578 CGTGACAACATCCAGGGTATCACAAAACCTGCAATCCGTCGTCTGGCTCGTCGTGGTGGT 25637 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || | || |||||| ||||||| |||| ||| | |||| ||||| | || || Sbjct 25638 GTGAAACGCATTTCAGGATTGATCTATGAGGAGACTCGCGGTGTTCTGAAGGTGTTTCTG 25697 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||||| || ||| || |||||||| || | ||||| || || Sbjct 25698 GAGAACGTGATCCGTGATGCAGTCACCTACACAGAGCACGCCAAGAGGAAGACAGTGACA 25757 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | || || || |||||||| ||||| |||| | || ||||| || || Sbjct 25758 GCTATGGACGTGGTGTACGCTTTGAAACGCCAAGGTCGTACTTTGTACGGTTTCGGTGGT 25817 Query 16697 TAAT 16700 |||| Sbjct 25818 TAAT 25821 >seq3163 Length=34048 Score = 156 bits (172), Expect = 7e-34 Identities = 182/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || || || ||||| |||||||| ||||| ||||| Sbjct 15515 CTACGTGATAACATCCAAGGTATTACGAAACCTGCTATTCGTCGTCTTGCTCGCCGTGGA 15456 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || | ||||| ||| |||| || || | ||||| ||| ||||| | || Sbjct 15455 GGTGTAAAACGCATTTCTGGTTTGATCTACGAGGAAACTCGTGGTGTGTTGAAAGTATTT 15396 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||||| | ||| ||| || || || ||||| || || || |||||||| Sbjct 15395 CTGGAAAATGTTATTCGTGACGCTGTCACATACACGGAGCATGCCAAGCGGAAGACTGTA 15336 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| | || ||||| |||||||| || || |||| | || |||||||| Sbjct 15335 ACCGCCATGGACGTAGTGTATGCTTTGAAACGCCAGGGTCGTACATTGTACGGTTTTGGT 15276 Query 16694 AGTTAA 16699 ||||| Sbjct 15275 GGTTAA 15270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79053846360015