Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4326 136 4e-27 >seq4326 Length=27076 Score = 136 bits (150), Expect = 4e-27 Identities = 360/549 (66%), Gaps = 48/549 (9%) Strand=Plus/Plus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| |||| ||||| || || ||||| |||||||||||||| | ||||||| ||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTA----------------------T 21284 |||||| ||||| ||||| ||||| | | | || | | | Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 21285 TACAACCC------------AGTTCTGATAATAATCTATCTGCTACAAATTCTATATATT 21332 ||||| || ||||| || || || ||||| | |||||| || || | Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392 ||||||| | || |||||||| || || || | || || ||||||| || ||||| Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 21393 ATTTTTCTAT-AGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGG--G 21449 | |||||| ||| || || || ||||| | | | | | || | || | Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTAT-----TGACTCAACACGTTCCTTGGAAG 16274 Query 21450 GATACA--ATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCC 21506 | | ||||| |||||||| | | ||| || ||||||||||| | ||||| || | Sbjct 16275 GCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTC 16334 Query 21507 TACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAA 21566 |||| ||||||||||| ||| | | || ||||| | |||| || || | ||| | Sbjct 16335 TACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGA 16394 Query 21567 ATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT 21625 |||| | || || ||| || |||||||||| || || || || ||||| |||| ||| Sbjct 16395 ATATAGCTGCGAA-GCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAA 16453 Query 21626 CGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCT 21685 ||||| | | ||||||| ||| ||||| | | |||||| | ||||||| | Sbjct 16454 CGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTT 16513 Query 21686 TTAATACAA 21694 || |||| Sbjct 16514 GCAACACAA 16522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531745518210200