Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 136 4e-27
>seq4326
Length=27076
Score = 136 bits (150), Expect = 4e-27
Identities = 360/549 (66%), Gaps = 48/549 (9%)
Strand=Plus/Plus
Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246
|||||| |||| ||||| || || ||||| |||||||||||||| | ||||||| |||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTA----------------------T 21284
|||||| ||||| ||||| ||||| | | | || | | |
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 21285 TACAACCC------------AGTTCTGATAATAATCTATCTGCTACAAATTCTATATATT 21332
||||| || ||||| || || || ||||| | |||||| || || |
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392
||||||| | || |||||||| || || || | || || ||||||| || |||||
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 21393 ATTTTTCTAT-AGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGG--G 21449
| |||||| ||| || || || ||||| | | | | | || | || |
Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTAT-----TGACTCAACACGTTCCTTGGAAG 16274
Query 21450 GATACA--ATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCC 21506
| | ||||| |||||||| | | ||| || ||||||||||| | ||||| || |
Sbjct 16275 GCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTC 16334
Query 21507 TACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAA 21566
|||| ||||||||||| ||| | | || ||||| | |||| || || | ||| |
Sbjct 16335 TACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGA 16394
Query 21567 ATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT 21625
|||| | || || ||| || |||||||||| || || || || ||||| |||| |||
Sbjct 16395 ATATAGCTGCGAA-GCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAA 16453
Query 21626 CGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCT 21685
||||| | | ||||||| ||| ||||| | | |||||| | ||||||| |
Sbjct 16454 CGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTT 16513
Query 21686 TTAATACAA 21694
|| ||||
Sbjct 16514 GCAACACAA 16522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531745518210200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |