Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4326 228 1e-54 seq973 96.9 4e-15 >seq4326 Length=27076 Score = 228 bits (252), Expect = 1e-54 Identities = 616/940 (66%), Gaps = 43/940 (5%) Strand=Plus/Plus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||| |||||||| || || || || ||||| || || |||||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 33075 CATGAAATCAAACGGATTG---------------------GTAAC-ATTATAA----Att 33108 ||| || ||||| |||||| | ||| |||| || ||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 33109 t--------ttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATG 33160 | ||| | | || | |||| | | || || |||| ||||| || || Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 33161 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 33220 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 33221 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACG-GTTTCTTCACTCGGTGGA 33279 | ||||| || ||||| ||| |||| || || ||| ||| ||| | | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280 Query 33280 TGCAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACT 33338 || |||| ||||||||| | | ||| |||||||| || || || || ||||||||||| Sbjct 16281 TG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338 Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398 |||| ||| ||| ||| | ||||| ||||| || || || || |||||||| ||||| Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398 Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 | ||||| ||||||||||| | ||||| ||||| ||||| ||||| | | || Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458 Query 33459 TCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33515 | || || | || || | ||||| | | ||||| | ||||| ||| || Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518 Query 33516 ACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33574 ||||| | ||| | |||||| || |||||| ||| |||| || ||||| | | Sbjct 16519 ACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 16577 Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634 | ||||| || || | | |||||||| || ||||| || || || || ||||| | | Sbjct 16578 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 16637 Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTT 33694 | || || || | | |||| | ||||| |||||| | || ||||| | || | Sbjct 16638 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTCT 16697 Query 33695 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 33754 | || ||||||||||| || ||||| || || || || | ||| |||| || Sbjct 16698 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 16757 Query 33755 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 33814 | | | || | ||||| ||| |||||| || | ||| || |||||||| | Sbjct 16758 CCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAG 16817 Query 33815 TCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGA 33874 ||||||| || || | ||||| ||||| | | ||||| || | |||| || |||| Sbjct 16818 TCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGA 16877 Query 33875 AAATAACAAATCTATTTGGATTTGGTGCAAGGATGGGTTC 33914 ||| || || | | ||| |||||| || | |||||| Sbjct 16878 AAAGGACGAAACGGTGTGGGTTTGGTTTCAGTAAGGGTTC 16917 >seq973 Length=64032 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || ||||| || ||||||| || | ||| ||| ||| ||||| || || || || Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63612 ||||| ||||| || |||| | | |||||||| || || | | |||| | || Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 13573 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 13574 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 13633 Query 63673 ACGTCT 63678 |||||| Sbjct 13634 ACGTCT 13639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622765338351800