Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 228 1e-54
seq973 96.9 4e-15
>seq4326
Length=27076
Score = 228 bits (252), Expect = 1e-54
Identities = 616/940 (66%), Gaps = 43/940 (5%)
Strand=Plus/Plus
Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074
||| |||||||| || || || || ||||| || || |||||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 33075 CATGAAATCAAACGGATTG---------------------GTAAC-ATTATAA----Att 33108
||| || ||||| |||||| | ||| |||| || |||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 33109 t--------ttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATG 33160
| ||| | | || | |||| | | || || |||| ||||| || ||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 33161 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 33220
||||| || ||||||||||| || | | ||||| ||||| | | | ||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 33221 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACG-GTTTCTTCACTCGGTGGA 33279
| ||||| || ||||| ||| |||| || || ||| ||| ||| | |
Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280
Query 33280 TGCAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACT 33338
|| |||| ||||||||| | | ||| |||||||| || || || || |||||||||||
Sbjct 16281 TG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 16338
Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398
|||| ||| ||| ||| | ||||| ||||| || || || || |||||||| |||||
Sbjct 16339 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 16398
Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458
| ||||| ||||||||||| | ||||| ||||| ||||| ||||| | | ||
Sbjct 16399 AGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 16458
Query 33459 TCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33515
| || || | || || | ||||| | | ||||| | ||||| ||| ||
Sbjct 16459 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 16518
Query 33516 ACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33574
||||| | ||| | |||||| || |||||| ||| |||| || ||||| | |
Sbjct 16519 ACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 16577
Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634
| ||||| || || | | |||||||| || ||||| || || || || ||||| | |
Sbjct 16578 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 16637
Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTT 33694
| || || || | | |||| | ||||| |||||| | || ||||| | || |
Sbjct 16638 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTTCT 16697
Query 33695 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 33754
| || ||||||||||| || ||||| || || || || | ||| |||| ||
Sbjct 16698 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 16757
Query 33755 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 33814
| | | || | ||||| ||| |||||| || | ||| || |||||||| |
Sbjct 16758 CCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAG 16817
Query 33815 TCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGA 33874
||||||| || || | ||||| ||||| | | ||||| || | |||| || ||||
Sbjct 16818 TCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGA 16877
Query 33875 AAATAACAAATCTATTTGGATTTGGTGCAAGGATGGGTTC 33914
||| || || | | ||| |||||| || | ||||||
Sbjct 16878 AAAGGACGAAACGGTGTGGGTTTGGTTTCAGTAAGGGTTC 16917
>seq973
Length=64032
Score = 96.9 bits (106), Expect = 4e-15
Identities = 134/186 (72%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554
|| || ||||| || ||||||| || | ||| ||| ||| ||||| || || || ||
Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515
Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63612
||||| ||||| || |||| | | |||||||| || || | | |||| | ||
Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 13573
Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672
|||| || ||||| | || || ||||| || ||||||||||||||||| | || || |
Sbjct 13574 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 13633
Query 63673 ACGTCT 63678
||||||
Sbjct 13634 ACGTCT 13639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622765338351800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |