Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq973 100 7e-16
seq4326 96.9 9e-15
seq4630 91.5 4e-13
>seq973
Length=64032
Score = 100 bits (110), Expect = 7e-16
Identities = 119/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203
|||||||| ||||| | || | |||||||||||| ||||| ||||| || || || ||
Sbjct 12507 CAGATTGAAACAGGCAATCCATTTATGTTGTACAAGGATTCTTGCAATCGTAAATCAAAT 12448
Query 364204 CAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACAC 364262
|| || || || || ||||||| || | ||||||||||| ||||| || |||| || |
Sbjct 12447 CATCAACATCTAGGCACAATTC-GCTGTAGCAACCTATGCACCGAAATAGTTGAGTATTC 12389
Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301
| || ||||| || || || ||||| || || || ||
Sbjct 12388 TTCACCAGACGAAACAGCTGTCTGTAATCTGGCCTCTAT 12350
>seq4326
Length=27076
Score = 96.9 bits (106), Expect = 9e-15
Identities = 327/507 (64%), Gaps = 47/507 (9%)
Strand=Plus/Minus
Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATT 22541
|| || |||||| | ||||| ||||| | || ||||| ||||||||||||| ||| ||
Sbjct 16464 TTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTCTTTTCTGGTAGC-TT 16406
Query 22542 TTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGA 22601
|| || || ||||| || ||||| | ||||||| || || | ||| |||||
Sbjct 16405 CGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAATGA 16346
Query 22602 GTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCA 22661
||||| || |||| || || || ||| ||||| || ||| | ||| | || ||
Sbjct 16345 ATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTATTT---AAACA 16289
Query 22662 TATCATTCATAAA--CTTCCATATGAAACTGT--ACTTGATATTATTACAAATGCAGTTG 22717
||| | ||| ||| |||||| | ||| ||| | | ||| || | | | || |||
Sbjct 16288 TATTA-TCAAAAAGCCTTCCA-AGGAACGTGTTGAGTCAATA--ATAAGAGAGGCGGTTC 16233
Query 22718 AACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCG 22777
| | |||| ||| | | || || ||||||| || | ||||| || ||| |
Sbjct 16232 TAATAGAACAGGAGTTTTTATCAGAAGCTCTACCAGTCAGCTTAATTGGAATGAATTGCA 16173
Query 22778 AATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATG 22837
|| ||| || || ||| ||||| | ||||| | ||| || || ||| |||||||
Sbjct 16172 AACTGATGTGTCAGTACATTGAATTTATCGCAGACAGGCTACTAGTTGAACTTGGTTATG 16113
Query 22838 CAAAGCATTATAA-------------CGT---CGTT------------------AATCCA 22863
|||| || ||| ||| |||| |||||
Sbjct 16112 AAAAGGTTTGTAAATTTTCTTTTAATCGTTTCCGTTTAGATGTATCATTCTGACAATCCT 16053
Query 22864 TTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTT 22923
||||| | |||||| ||| ||| | ||||||||||| || || || || || |||||
Sbjct 16052 TTTGACTTTATGGAAAATATATCAATCGAAGGAAAGACAAACTTTTTTGAGAAGCGAGTT 15993
Query 22924 GGTGAATACCAAAAAGCAGGTGTTATG 22950
|||||||| ||| || ||||| |||
Sbjct 15992 GGTGAATATCAACGTGCTGGTGTCATG 15966
>seq4630
Length=25536
Score = 91.5 bits (100), Expect = 4e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821
||||||||||| ||||| |||||||||||||| || || | || | | || ||||||
Sbjct 12830 GGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCAT 12771
Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881
|||| | | ||||| ||||| ||| ||||| || || ||||||||| |||| ||
Sbjct 12770 ATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTATTCA 12711
Query 111882 AACCA 111886
|||||
Sbjct 12710 AACCA 12706
Score = 84.2 bits (92), Expect = 6e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410
||||| || |||||||| | ||||||||||| ||| |||||| | |||||| ||
Sbjct 18731 GGAATCGTAGAAGAACTATTATGGTTTATTCGTGGATCTACAAACTCTCGTGAACTGGCG 18672
Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGAT 111461
| || |||||| | | ||||||| ||||||||| ||||| ||| |||||
Sbjct 18671 GAGAAGAATGTACATTTCTGGGATGCAAATGGATCTCGTGAATTTTTAGAT 18621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302963589763610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |