Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq973 100 7e-16 seq4326 96.9 9e-15 seq4630 91.5 4e-13 >seq973 Length=64032 Score = 100 bits (110), Expect = 7e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||||||| ||||| | || | |||||||||||| ||||| ||||| || || || || Sbjct 12507 CAGATTGAAACAGGCAATCCATTTATGTTGTACAAGGATTCTTGCAATCGTAAATCAAAT 12448 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACAC 364262 || || || || || ||||||| || | ||||||||||| ||||| || |||| || | Sbjct 12447 CATCAACATCTAGGCACAATTC-GCTGTAGCAACCTATGCACCGAAATAGTTGAGTATTC 12389 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301 | || ||||| || || || ||||| || || || || Sbjct 12388 TTCACCAGACGAAACAGCTGTCTGTAATCTGGCCTCTAT 12350 >seq4326 Length=27076 Score = 96.9 bits (106), Expect = 9e-15 Identities = 327/507 (64%), Gaps = 47/507 (9%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATT 22541 || || |||||| | ||||| ||||| | || ||||| ||||||||||||| ||| || Sbjct 16464 TTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTCTTTTCTGGTAGC-TT 16406 Query 22542 TTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGA 22601 || || || ||||| || ||||| | ||||||| || || | ||| ||||| Sbjct 16405 CGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAATGA 16346 Query 22602 GTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCA 22661 ||||| || |||| || || || ||| ||||| || ||| | ||| | || || Sbjct 16345 ATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTATTT---AAACA 16289 Query 22662 TATCATTCATAAA--CTTCCATATGAAACTGT--ACTTGATATTATTACAAATGCAGTTG 22717 ||| | ||| ||| |||||| | ||| ||| | | ||| || | | | || ||| Sbjct 16288 TATTA-TCAAAAAGCCTTCCA-AGGAACGTGTTGAGTCAATA--ATAAGAGAGGCGGTTC 16233 Query 22718 AACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCG 22777 | | |||| ||| | | || || ||||||| || | ||||| || ||| | Sbjct 16232 TAATAGAACAGGAGTTTTTATCAGAAGCTCTACCAGTCAGCTTAATTGGAATGAATTGCA 16173 Query 22778 AATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATG 22837 || ||| || || ||| ||||| | ||||| | ||| || || ||| ||||||| Sbjct 16172 AACTGATGTGTCAGTACATTGAATTTATCGCAGACAGGCTACTAGTTGAACTTGGTTATG 16113 Query 22838 CAAAGCATTATAA-------------CGT---CGTT------------------AATCCA 22863 |||| || ||| ||| |||| ||||| Sbjct 16112 AAAAGGTTTGTAAATTTTCTTTTAATCGTTTCCGTTTAGATGTATCATTCTGACAATCCT 16053 Query 22864 TTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTT 22923 ||||| | |||||| ||| ||| | ||||||||||| || || || || || ||||| Sbjct 16052 TTTGACTTTATGGAAAATATATCAATCGAAGGAAAGACAAACTTTTTTGAGAAGCGAGTT 15993 Query 22924 GGTGAATACCAAAAAGCAGGTGTTATG 22950 |||||||| ||| || ||||| ||| Sbjct 15992 GGTGAATATCAACGTGCTGGTGTCATG 15966 >seq4630 Length=25536 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| ||||| |||||||||||||| || || | || | | || |||||| Sbjct 12830 GGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCAT 12771 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 |||| | | ||||| ||||| ||| ||||| || || ||||||||| |||| || Sbjct 12770 ATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTATTCA 12711 Query 111882 AACCA 111886 ||||| Sbjct 12710 AACCA 12706 Score = 84.2 bits (92), Expect = 6e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 ||||| || |||||||| | ||||||||||| ||| |||||| | |||||| || Sbjct 18731 GGAATCGTAGAAGAACTATTATGGTTTATTCGTGGATCTACAAACTCTCGTGAACTGGCG 18672 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGAT 111461 | || |||||| | | ||||||| ||||||||| ||||| ||| ||||| Sbjct 18671 GAGAAGAATGTACATTTCTGGGATGCAAATGGATCTCGTGAATTTTTAGAT 18621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302963589763610