Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq13659 89.7 5e-13 seq4612 87.8 2e-12 >seq13659 Length=5019 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | |||||||| || ||||||||||| || | Sbjct 1099 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAC 1158 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||| || ||| | || ||||| || ||||| ||||| Sbjct 1159 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 1218 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| ||| || | | ||| | |||||| | | ||| | Sbjct 1219 ATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACC 1278 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || | || ||||| || || ||||| Sbjct 1279 TCCAACGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||||| || | ||||| ||| ||||| || || |||||||| || Sbjct 870 GCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 929 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | |||||| || ||| | || ||||| || ||||| ||||| Sbjct 930 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 989 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || | | ||| | |||||| | | ||| | Sbjct 990 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 1049 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || ||||| || | || || || || || ||||| Sbjct 1050 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097 >seq4612 Length=25615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||||| || | ||||| ||| ||||| || || ||||||||||| Sbjct 15957 GCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGA 15898 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | |||||| || ||| | || ||||| || ||||| ||||| Sbjct 15897 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 15838 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || | | ||| | |||||| | | ||| | Sbjct 15837 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 15778 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || ||||| || | || || || || || ||||| Sbjct 15777 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | |||||||| || || ||||||||||| | Sbjct 15728 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGAC 15669 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||| || ||| | || ||||| || ||||| ||||| Sbjct 15668 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 15609 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| ||| || | | ||| | |||||| | | ||| | Sbjct 15608 ATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACC 15549 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || ||||| || | || || || || || ||||| Sbjct 15548 TCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471875001763200