Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq16968 140 2e-28
seq9662 132 3e-26
seq4612 109 4e-19
seq13659 100 2e-16
>seq16968
Length=2442
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1638 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1697
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1698 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1732
>seq9662
Length=10629
Score = 132 bits (146), Expect = 3e-26
Identities = 85/93 (91%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958
|||||||||||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 2808 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAATAGATAGGGACAATGGGAATCTCGTTA 2867
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||||||||||||||||||||||||||||
Sbjct 2868 ATCCATTCATGCGCGTCACTAATTAGATGACGA 2900
>seq4612
Length=25615
Score = 109 bits (120), Expect = 4e-19
Identities = 164/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | || | ||| ||||| ||| || || || |||||||
Sbjct 15732 CATT-CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAAT 15674
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
|||||| | |||| | || || || || || || || ||||| | |||||||| || |
Sbjct 15673 CAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAG 15614
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||||||||| || || |||||||||| | |||||| | | |
Sbjct 15613 GAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCT 15554
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| ||||| || || || ||||| ||||| || ||||| || || |||||
Sbjct 15553 CAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15502
Score = 104 bits (114), Expect = 2e-17
Identities = 163/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | || | ||| ||||| ||| || || || ||||| |
Sbjct 15504 CATT-CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGT 15446
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
|||||| | |||| | || || || || || || || ||||| | |||||||| || |
Sbjct 15445 CAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAG 15386
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||||||||| || || |||||||||| | |||||| | | |
Sbjct 15385 GAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCT 15326
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| ||||| || || || ||||| ||||| || ||||| || || |||||
Sbjct 15325 CAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15274
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| || || || ||||||||||||| | |||| | || || || || || || || ||
Sbjct 15921 CTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15862
Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245
||| | |||||||| || | || | ||||||||||| || || ||||||||
Sbjct 15861 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 15802
Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305
|| | |||||| | | ||||| ||||| || || || ||||| ||||| || |||||
Sbjct 15801 CTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCAC 15742
Query 38306 GAATATCTGCAT 38317
|| || |||||
Sbjct 15741 AAAGATTTGCAT 15730
>seq13659
Length=5019
Score = 100 bits (110), Expect = 2e-16
Identities = 162/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | || | ||| ||||| ||| || ||||| ||||| |
Sbjct 1095 CATT-CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGT 1153
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
|||||| | |||| | || || || || || || || ||||| | |||||||| || |
Sbjct 1154 CAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAG 1213
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||||||||||| || || |||||||||| | |||||| | | |
Sbjct 1214 GAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCT 1273
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || ||||| || || || ||||| || || || || || |||||
Sbjct 1274 CAACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325
Score = 98.7 bits (108), Expect = 7e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| || || || ||||| ||||||| | |||| | || || || || || || || ||
Sbjct 906 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 965
Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245
||| | |||||||| || | || | ||||||||||| || || ||||||||
Sbjct 966 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 1025
Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305
|| | |||||| | | ||||| ||||| || || || ||||| ||||| || |||||
Sbjct 1026 CTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCAC 1085
Query 38306 GAATATCTGCAT 38317
|| || |||||
Sbjct 1086 AAAGATTTGCAT 1097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334851860943005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |