Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 241 2e-58
seq973 109 7e-19
>seq4326
Length=27076
Score = 241 bits (266), Expect = 2e-58
Identities = 600/905 (66%), Gaps = 47/905 (5%)
Strand=Plus/Plus
Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431
||| |||||||| || || || || ||||| || || || ||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 32432 CATGAAATCGAATGGATTG---------------------GTAAC-ATTATAA----Att 32465
||| || || || |||||| | ||| |||| || |||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 32466 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATG 32517
| ||| | | || | |||| | | || ||||||| |||||| || ||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 32518 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 32577
||||| || ||||||||||| || | | ||||| ||||| | | | ||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 32578 CTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGATCTTACT-GTTTCTTCACTCGGTGG 32635
| ||||| || ||| ||||| ||| |||| || || || ||| ||| | |
Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279
Query 32636 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTAC 32694
| |||| ||||||||| | | ||| |||||||| || ||||| || ||||||||||
Sbjct 16280 TTG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337
Query 32695 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 32754
| |||||||| ||| ||| | ||||| ||||| || || || || |||||||| ||||
Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397
Query 32755 TGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 32814
| | || || ||||||||||||| ||||| ||||| ||||| ||||| | | |
Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457
Query 32815 CTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 32871
|| || || | || || | ||||| | | ||||| | ||||| ||| |
Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517
Query 32872 CACAAGGCA--TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 32929
|||||| | ||| || ||| || || |||||| ||| |||| || ||||| |
Sbjct 16518 CACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 32930 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 32989
||||||||||| || | | |||||||| || ||||| || || || || || || |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 32990 TCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 33049
|| || ||||| | | |||| | ||||| |||||| | || |||||| | ||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695
Query 33050 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33109
|| || ||||||||||| || ||||| || || || || | ||| ||||
Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755
Query 33110 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 33169
||| | | || | ||||| ||| |||||| || | |||||| ||||||||
Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815
Query 33170 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 33229
|||||||| || || | ||||| ||||| | || ||||| || || |||| || ||
Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875
Query 33230 AAAAA 33234
||||
Sbjct 16876 GAAAA 16880
>seq973
Length=64032
Score = 109 bits (120), Expect = 7e-19
Identities = 137/186 (74%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409
|| || ||||| || ||||||| || | ||| ||| ||| |||||||| || |||||
Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515
Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63467
||||||||||| || |||| | | |||||||| || || | | |||| | ||
Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 13573
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527
|||| || ||||| | || || ||||| || ||||||||||||||||| | || || |
Sbjct 13574 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 13633
Query 63528 ACGTCT 63533
||||||
Sbjct 13634 ACGTCT 13639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633447019058000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |