Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4326 241 2e-58 seq973 109 7e-19 >seq4326 Length=27076 Score = 241 bits (266), Expect = 2e-58 Identities = 600/905 (66%), Gaps = 47/905 (5%) Strand=Plus/Plus Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 ||| |||||||| || || || || ||||| || || || ||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 32432 CATGAAATCGAATGGATTG---------------------GTAAC-ATTATAA----Att 32465 ||| || || || |||||| | ||| |||| || ||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 32466 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATG 32517 | ||| | | || | |||| | | || ||||||| |||||| || || Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 32518 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 32577 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 32578 CTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGATCTTACT-GTTTCTTCACTCGGTGG 32635 | ||||| || ||| ||||| ||| |||| || || || ||| ||| | | Sbjct 16221 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 16279 Query 32636 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTAC 32694 | |||| ||||||||| | | ||| |||||||| || ||||| || |||||||||| Sbjct 16280 TTG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337 Query 32695 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 32754 | |||||||| ||| ||| | ||||| ||||| || || || || |||||||| |||| Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397 Query 32755 TGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 32814 | | || || ||||||||||||| ||||| ||||| ||||| ||||| | | | Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457 Query 32815 CTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 32871 || || || | || || | ||||| | | ||||| | ||||| ||| | Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517 Query 32872 CACAAGGCA--TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 32929 |||||| | ||| || ||| || || |||||| ||| |||| || ||||| | Sbjct 16518 CACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575 Query 32930 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 32989 ||||||||||| || | | |||||||| || ||||| || || || || || || | Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635 Query 32990 TCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 33049 || || ||||| | | |||| | ||||| |||||| | || |||||| | || Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695 Query 33050 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33109 || || ||||||||||| || ||||| || || || || | ||| |||| Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755 Query 33110 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 33169 ||| | | || | ||||| ||| |||||| || | |||||| |||||||| Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815 Query 33170 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 33229 |||||||| || || | ||||| ||||| | || ||||| || || |||| || || Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875 Query 33230 AAAAA 33234 |||| Sbjct 16876 GAAAA 16880 >seq973 Length=64032 Score = 109 bits (120), Expect = 7e-19 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || ||||| Sbjct 13456 CCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 13515 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63467 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 13516 TCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 13573 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 13574 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 13633 Query 63528 ACGTCT 63533 |||||| Sbjct 13634 ACGTCT 13639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633447019058000