Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 118 9e-22
seq13659 114 1e-20
>seq4612
Length=25615
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| ||||| ||||| | ||||| | || || ||| |
Sbjct 15501 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15560
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| ||||| ||| |||| || ||| ||||||||||| ||||| ||||||||
Sbjct 15561 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15620
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || || || || || || ||||||| || ||| || ||||||||
Sbjct 15621 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAA 15680
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || ||||| || || || ||| | || || | ||| | || ||||
Sbjct 15681 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 15730
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| ||||| ||||| | ||||| | || || ||| |
Sbjct 15729 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15788
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| ||||| ||| |||| || ||| ||||||||||| ||||| ||||||||
Sbjct 15789 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15848
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || || || || || || ||||||| || ||| || ||||||||
Sbjct 15849 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAA 15908
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || ||||| || || ||||| | || || | ||| | |||||
Sbjct 15909 CATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGG 15956
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| ||||| ||||| | ||||| | || || ||| |
Sbjct 15273 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15332
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| ||||| ||| |||| || ||| ||||||||||| ||||| ||||||||
Sbjct 15333 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15392
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || || || || || || ||||||| || ||| || || |||||
Sbjct 15393 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 15452
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || ||||| || || || ||| | || || | ||| | || ||||
Sbjct 15453 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 15502
>seq13659
Length=5019
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| ||||| ||||| | ||||| | || || ||| |
Sbjct 1098 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 1039
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||| ||||| ||| |||| || ||| ||||||||||| ||||| ||||||||
Sbjct 1038 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 979
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || || || || || || ||||||| || ||| || || |||||
Sbjct 978 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 919
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || ||||| || || ||||| | || || | ||| | |||||
Sbjct 918 CATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGG 871
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||||||||| ||||| || || | || || | || || ||| | |
Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| ||||| ||| |||| || ||| ||||||||||| ||||| |||||||||
Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 1206
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || || || || || || || ||||||| || ||| || || |||||
Sbjct 1205 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 1146
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
||||| ||||| || || || ||| | || || | ||| | || ||||
Sbjct 1145 ATTCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 1097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433204657924325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |