Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 242 4e-59
>seq4326
Length=27076
Score = 242 bits (268), Expect = 4e-59
Identities = 538/797 (68%), Gaps = 20/797 (3%)
Strand=Plus/Plus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
|| || || | |||||| ||||||||| |||||| | ||||||||||| | | |
Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195
Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043
|| |||||||| || | || || || | || |||| ||| || ||| | | |||
Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTG-- 16253
Query 93044 ATTACTCTAC----TATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098
|||| || | |||| || |||| | | || || | | || || || |
Sbjct 16254 ---ACTCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGA 16310
Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158
| || ||||| |||||||||| || || |||||||| || | | || || |
Sbjct 16311 AATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCA 16370
Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218
|| ||||||||||| ||||| ||||| | || || ||||||||||| || | |||||
Sbjct 16371 TAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACACCTT 16430
Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC---GGAATTACTGCTGATCC 93275
|||| |||||||| || | | |||||| |||||| | | ||||| || | ||||
Sbjct 16431 CCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAAT--CTCCA-ATCC 16487
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG-ATAGCGTTAAAT 93334
| | ||| ||||| | || ||||| || ||||| || ||| | || ||||| ||
Sbjct 16488 AATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAA-GTTGCTTATGGCGTTGAAG 16546
Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394
|| | || | || | || ||| ||||||||||| ||||| | ||| |||||||||
Sbjct 16547 AGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCA 16606
Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454
|| || | |||||| || || || || | || || || || | | | || | ||||||
Sbjct 16607 GAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGG 16666
Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514
|||||||| || | |||| ||| || || || || || || || |||||
Sbjct 16667 ACTTCTTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAG 16726
Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574
||||| || | | ||| ||||| || || | || ||| ||||||| | ||
Sbjct 16727 AAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAAT-GTAT 16785
Query 93575 -AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633
|||||||| || | ||| || ||||| ||||||||||| || ||| | || || || ||
Sbjct 16786 GAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845
Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693
| || ||| | || || |||| || || || | ||| ||||| | ||||| |||
Sbjct 16846 AAAATGCCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGTTT 16905
Query 93694 TAGTAACGGCTCTAGTT 93710
||||| || |||||||
Sbjct 16906 CAGTAAGGGTTCTAGTT 16922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556698231450200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |