Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4326 242 4e-59 >seq4326 Length=27076 Score = 242 bits (268), Expect = 4e-59 Identities = 538/797 (68%), Gaps = 20/797 (3%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || | |||||| ||||||||| |||||| | ||||||||||| | | | Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || |||||||| || | || || || | || |||| ||| || ||| | | ||| Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTG-- 16253 Query 93044 ATTACTCTAC----TATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 |||| || | |||| || |||| | | || || | | || || || | Sbjct 16254 ---ACTCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGA 16310 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || ||||| |||||||||| || || |||||||| || | | || || | Sbjct 16311 AATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCA 16370 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || ||||||||||| ||||| ||||| | || || ||||||||||| || | ||||| Sbjct 16371 TAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACACCTT 16430 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC---GGAATTACTGCTGATCC 93275 |||| |||||||| || | | |||||| |||||| | | ||||| || | |||| Sbjct 16431 CCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAAT--CTCCA-ATCC 16487 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG-ATAGCGTTAAAT 93334 | | ||| ||||| | || ||||| || ||||| || ||| | || ||||| || Sbjct 16488 AATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAA-GTTGCTTATGGCGTTGAAG 16546 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || | || | || | || ||| ||||||||||| ||||| | ||| ||||||||| Sbjct 16547 AGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCA 16606 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || | |||||| || || || || | || || || || | | | || | |||||| Sbjct 16607 GAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGG 16666 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 |||||||| || | |||| ||| || || || || || || || ||||| Sbjct 16667 ACTTCTTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAG 16726 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 ||||| || | | ||| ||||| || || | || ||| ||||||| | || Sbjct 16727 AAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAAT-GTAT 16785 Query 93575 -AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 |||||||| || | ||| || ||||| ||||||||||| || ||| | || || || || Sbjct 16786 GAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 | || ||| | || || |||| || || || | ||| ||||| | ||||| ||| Sbjct 16846 AAAATGCCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGTTT 16905 Query 93694 TAGTAACGGCTCTAGTT 93710 ||||| || ||||||| Sbjct 16906 CAGTAAGGGTTCTAGTT 16922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556698231450200