Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 125 6e-24
seq13659 102 7e-17
seq6368 87.8 2e-12
>seq4612
Length=25615
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || || || ||||| ||| |||| | || || || | |
Sbjct 15730 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15789
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| || || |||||||| || |||||||| || || |||
Sbjct 15790 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15849
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | ||||| || || || ||||| || ||| || || | || |||||||||
Sbjct 15850 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAAC 15909
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || ||||| || ||| ||||| | ||| |||| | || |||||
Sbjct 15910 ATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGG 15956
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || || || ||||| ||| |||| | || || || | |
Sbjct 15502 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15561
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| || || |||||||| || |||||||| || || |||
Sbjct 15562 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15621
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||| | ||||| || || || ||||| || ||| || || | || |||||||||
Sbjct 15622 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAAC 15681
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || ||||| || ||
Sbjct 15682 ATCCAGAAAGAGTCGAC 15698
>seq13659
Length=5019
Score = 102 bits (112), Expect = 7e-17
Identities = 142/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
|||||||||| ||||| || || || || || || ||| | || | || || || | |
Sbjct 1327 AGATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTA 1268
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
||||| | || || | ||| || || |||||||| || |||||||| || || |
Sbjct 1267 GTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACC 1208
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
|||||||| | ||||| || || || ||||| || ||| || || | || || ||||
Sbjct 1207 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 1148
Query 22397 ACATTCAAAAAGAATCCAC 22415
||||||| ||||| || ||
Sbjct 1147 ACATTCAGAAAGAGTCGAC 1129
>seq6368
Length=18664
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277
|||||| ||||| || || || | || || ||||| | || || ||||| || | |
Sbjct 629 GATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGC 688
Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337
||||| | || | | || ||||||||||| || || || || ||||| || ||
Sbjct 689 TGATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCA 748
Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397
||||||||| || ||||| |||||||| | || ||| || || | ||||| || ||
Sbjct 749 ACAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAA 808
Query 22398 CATTCAAAAAGAATCCAC 22415
|| || || ||||| ||
Sbjct 809 TATACAGAAGGAATCAAC 826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419608529015575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |