Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6368 143 5e-29 seq188 84.2 4e-11 >seq6368 Length=18664 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || || || || || || ||||| ||||| Sbjct 856 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 797 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || || || || || || | ||||||||| ||||| Sbjct 796 AGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGG 737 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| || |||||||| || ||||| || || || || || || || | || ||| Sbjct 736 ATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACT 677 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || ||||||||||| || ||||| ||||| |||||||| Sbjct 676 TCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630 >seq188 Length=106749 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || || |||||||| || ||||||||||| ||||| || ||||| || Sbjct 106659 CCTCCACGAAGACGTAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 106718 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 | ||| | |||||||| | ||||||||| Sbjct 106719 AATGTACGACCATCTTCCAGCTGCTTCCC 106747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921353343860600