Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 96.9 4e-15
seq13659 91.5 2e-13
>seq4612
Length=25615
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | || |||| || | ||| || || ||| || || || |||||||||| |
Sbjct 15956 CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGAC 15897
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||| || | || || | |||||||||||||||||| | || || ||||| | ||
Sbjct 15896 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 15837
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | || ||||| ||| || ||| | || | | || || || | || ||
Sbjct 15836 ATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACC 15777
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| | |||||| || || || || | |||||| |||||||||||||||
Sbjct 15776 TCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729
Score = 91.5 bits (100), Expect = 2e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || |||||||||| |||||| || | || || | |||||||||||||||
Sbjct 15693 CTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15634
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||| | || || ||||| | || | | || ||||| ||| || ||| | |
Sbjct 15633 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 15574
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | || || || | || || || | |||||| || || || || | |||||| ||
Sbjct 15573 CTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCAC 15514
Query 42197 AAAGATTTGCATT 42209
|||||||||||||
Sbjct 15513 AAAGATTTGCATT 15501
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || ||||| |||| |||||| || | || || | |||||||||||||||
Sbjct 15465 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15406
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||| | || || ||||| | || | | || ||||| ||| || ||| | |
Sbjct 15405 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 15346
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | || || || | || || || | |||||| || || || || | |||||| ||
Sbjct 15345 CTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCAC 15286
Query 42197 AAAGATTTGCATT 42209
|||||||||||||
Sbjct 15285 AAAGATTTGCATT 15273
>seq13659
Length=5019
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | || |||| || | ||| || || ||| || || || ||||| |||| |
Sbjct 871 CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGAC 930
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||| || | || || | |||||||||||||||||| | || || ||||| | ||
Sbjct 931 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 990
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | || ||||| ||| || ||| | || | | || || || | || ||
Sbjct 991 ATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACC 1050
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| | |||||| || || || || | |||||| |||||||||||||||
Sbjct 1051 TCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098
Score = 86.0 bits (94), Expect = 7e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || ||||| ||||| |||| |||||| || | || || | |||||||||||||||
Sbjct 1134 CTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 1193
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||| | || || ||||| | || | | || ||||| ||| || ||| | |
Sbjct 1194 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 1253
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | || || || | || || || | ||| || || || || || | ||||||||
Sbjct 1254 CTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTAC 1313
Query 42197 AAAGATTTGCAT 42208
||||||||||||
Sbjct 1314 AAAGATTTGCAT 1325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543054215813200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |