Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 111 2e-19
seq13659 109 5e-19
>seq4612
Length=25615
Score = 111 bits (122), Expect = 2e-19
Identities = 155/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | ||||| ||||| || ||||||||||| | | || || | ||
Sbjct 15714 AAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATC 15655
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | |||||| || || | || | || || ||||| |||||||| |||||||| ||
Sbjct 15654 TTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC 15595
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
||| | | || ||||| ||| ||| | ||||||| | || || |||| || | |
Sbjct 15594 TTGGA-TCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCG 15536
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||| || ||||| || || || || |||||||||
Sbjct 15535 TCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || || ||||| || ||||||||||| | | || || | |||
Sbjct 15941 AGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCT 15882
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | |||||| || || | || | || || ||||| |||||||| |||||||| |||
Sbjct 15881 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15822
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | | || ||||| ||| ||| | ||||||| | || || |||| || | ||
Sbjct 15821 TGGA-TCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGT 15763
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| || ||||| || || || || |||||||||
Sbjct 15762 CTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729
>seq13659
Length=5019
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | ||||| ||||| ||||||||||| || | | || || | ||
Sbjct 1113 AAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATC 1172
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | |||||| || || | || | || || ||||| |||||||| |||||||| ||
Sbjct 1173 TTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC 1232
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
||| | | || ||||| ||| ||| | ||||||| | || || || | || | |
Sbjct 1233 TTGGA-TCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCG 1291
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| || ||||| || ||||| || ||||||||
Sbjct 1292 TCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499498934946200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |