Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 105 7e-18
seq4612 100 3e-16
seq6368 87.8 2e-12
>seq13659
Length=5019
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | |||| ||| | ||||| | ||||||| || || |||||||||||
Sbjct 870 GCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 929
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| |||||| || || | || ||||| | | || | ||| |||||||| |||||
Sbjct 930 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 989
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|||||||||||||| ||| || ||| | | || | || || | | ||| ||
Sbjct 990 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 1049
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | ||| | ||| |||||||||| || || ||||| || |||||
Sbjct 1050 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || |||||||||||||| || |||||| || || | || ||||| |
Sbjct 1132 GACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 1191
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || | ||| |||||||| ||||| |||||||||||||| ||| || ||| |
Sbjct 1192 AATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 1251
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | || || | | ||| ||||| | ||| | ||| || || |||| || |||
Sbjct 1252 TTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTT 1311
Query 138601 ACAAAAATCTGCAT 138614
||||| || |||||
Sbjct 1312 ACAAAGATTTGCAT 1325
>seq4612
Length=25615
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | |||| ||| | ||||| | ||||||| || || |||||||| ||
Sbjct 15957 GCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGA 15898
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| |||||| || || | || ||||| | | || | ||| |||||||| |||||
Sbjct 15897 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 15838
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|||||||||||||| ||| || ||| | | || | || || | | ||| ||
Sbjct 15837 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 15778
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | ||| | ||| |||||||||| || || ||||| || |||||
Sbjct 15777 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || ||||||||||| || |||||| || || | || ||||| |
Sbjct 15467 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 15408
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || | ||| |||||||| ||||| |||||||||||||| ||| || ||| |
Sbjct 15407 AATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 15348
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | || || | | ||| ||||| | ||| | ||| |||||||||| || ||
Sbjct 15347 TTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTC 15288
Query 138601 ACAAAAATCTGCAT 138614
||||| || |||||
Sbjct 15287 ACAAAGATTTGCAT 15274
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || |||||||| || || |||||| || || | || ||||| |
Sbjct 15695 GACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 15636
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || | ||| |||||||| ||||| |||||||||||||| ||| || ||| |
Sbjct 15635 AATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 15576
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | || || | | ||| ||||| | ||| | ||| |||||||||| || ||
Sbjct 15575 TTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTC 15516
Query 138601 ACAAAAATCTGCAT 138614
||||| || |||||
Sbjct 15515 ACAAAGATTTGCAT 15502
>seq6368
Length=18664
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||| ||||| || || || |||||| | ||| || || || |||||||| || |
Sbjct 825 TTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAG 766
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| | |||||||| |||||||| || || || |||||||| || ||| |||| | |||
Sbjct 765 CAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCT-TGAATTTTCGCCTTA 707
Query 138539 ATTG-TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
| || ||| | || || | | ||| || || | || | ||||| || || || ||
Sbjct 706 ACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTC 647
Query 138598 TTTACAAAAATCTGCAT 138614
|| || |||||||||||
Sbjct 646 TTCACGAAAATCTGCAT 630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496117522395600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |