Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 118 8e-22
seq6368 89.7 4e-13
>seq4612
Length=25615
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | ||| | ||| || ||||| || ||||||||||| ||| | | | |||||
Sbjct 15939 AACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTC 15880
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
|| || || |||||| |||||||||| |||||||| ||||| ||||| |||||
Sbjct 15879 CAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG 15820
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| || ||| ||| | || |||||||| ||| || || ||||| || || || ||
Sbjct 15819 GATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTT 15760
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||| |||| || || ||||| ||||||||
Sbjct 15759 ACCAGTCAACGTCTTCACAAAGATTTGCAT 15730
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| || || || ||||| || ||||||||||| ||| | | | ||||| || ||
Sbjct 15705 ATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTG 15646
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| |||||| |||||||||| |||||||| ||||| ||||| ||||| || ||
Sbjct 15645 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15586
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||| ||| | || |||||||| ||| || || ||||| || || || ||||| ||
Sbjct 15585 CGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGT 15526
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| ||||||||
Sbjct 15525 CAACGTCTTCACAAAGATTTGCAT 15502
>seq6368
Length=18664
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||| || || || || ||||| || || ||| ||| ||| | ||||| | |||
Sbjct 833 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 774
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||||||||| | || | ||| |||||||| ||| || ||||| || || ||||||
Sbjct 773 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 714
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| || |||||| ||||| | || || |||| ||| || ||||| || ||
Sbjct 713 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGT 654
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || ||||| |||||
Sbjct 653 AAGTGTCTTCACGAAAATCTGCAT 630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357290272276175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |